Non-Coding RNA Search

Ss1.1-rcbl0_015180.5

Sequence:


               
               GATGTACAGAAATTCTCAGACAACGACAAGCTGTATCTCTACCTTCAGCTCCCCTCAGGG
CCCAGTACTGGGGACAAAAGCTCAGAGCCAAGCACACTCAGCAATGAGGAGTACATGTAT
GCTTACAGGTGGATCCGCAACCATCTAGAAGAGCATACGGACACCTGTCTGCCGAAACAA
AGTGTTTATGATGCCTATCGGAAGTACTGTGAAAGCCTTGCCTGCTGCCGCCCACTCAGC
ACAGCCAACTTTGGCAAAATCATCAGAGAGATCTTCCCTGACATCAAGGCGCGAAGGCTT
GGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCATACGAAGGAAGACCTTGGTATCT
ATGCCACCCTTGCCCGGACTTGACCTAAAGGGCTCTGAGAGTCCAGAAATGGGCCCAGAA
GTAACCCCAGCACCTCGGGATGAGCTGGTCGAAGCAGCCTGTGCCCTGACCTGTGACTGG
GCAGAACGGATCCTGAAACGGTCCTTCAGTTCCATTGTCGAGGTCGCCCGCTTCCTGCTG
CAGCAGCATCTTATCTCTGCCCGATCTGCACATGCCCATGTGCTCAAGGCCATGGGGCTT
GCTGGCAGTCAGAGGCGCCTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTACAGAAATTCTCAGACAACGACAAGCTGTATCTCTACCTTCAGCTCCCCTCAGGG
CCCAGTACTGGGGACAAAAGCTCAGAGCCAAGCACACTCAGCAATGAGGAGTACATGTAT
GCTTACAGGTGGATCCGCAACCATCTAGAAGAGCATACGGACACCTGTCTGCCGAAACAA
AGTGTTTATGATGCCTATCGGAAGTACTGTGAAAGCCTTGCCTGCTGCCGCCCACTCAGC
ACAGCCAACTTTGGCAAAATCATCAGAGAGATCTTCCCTGACATCAAGGCGCGAAGGCTT
GGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCATACGAAGGAAGACCTTGGTATCT
ATGCCACCCTTGCCCGGACTTGACCTAAAGGGCTCTGAGAGTCCAGAAATGGGCCCAGAA
GTAACCCCAGCACCTCGGGATGAGCTGGTCGAAGCAGCCTGTGCCCTGACCTGTGACTGG
GCAGAACGGATCCTGAAACGGTCCTTCAGTTCCATTGTCGAGGTCGCCCGCTTCCTGCTG
CAGCAGCATCTTATCTCTGCCCGATCTGCACATGCCCATGTGCTCAAGGCCATGGGGCTT
GCTGGCAGTCAGAGGCGCCTCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55588168|ref|XP_513794.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55588168|ref|XP_513794.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, - strand, RNAz p=0.55979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.55979

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-201, gnl|bosTau2|chr3 (16215067-16215189)
               

               
               79-201, gnl|Hg17|chr1 (148130398-148130276)
               

               
               79-201, gnl|Mm7|chr3 (94830219-94830341)
               


               
               403-605, gnl|bosTau2|chr3 (16216018-16216220)
               

               
               403-605, gnl|Hg17|chr1 (148129431-148129229)
               

               
               403-605, gnl|Mm7|chr3 (94831046-94831248)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-201, gnl|bosTau2|chr3 (16215067-16215189)
               

               
               79-201, gnl|Hg17|chr1 (148130398-148130276)
               

               
               79-201, gnl|Mm7|chr3 (94830219-94830341)
               


               
               403-605, gnl|bosTau2|chr3 (16216018-16216220)
               

               
               403-605, gnl|Hg17|chr1 (148129431-148129229)
               

               
               403-605, gnl|Mm7|chr3 (94831046-94831248)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (2.18115)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (2.18115)

	79-201, gnl\|bosTau2\|chr3 (16215067-16215189)
	79-201, gnl\|Hg17\|chr1 (148130398-148130276)
	79-201, gnl\|Mm7\|chr3 (94830219-94830341)

	403-605, gnl\|bosTau2\|chr3 (16216018-16216220)
	403-605, gnl\|Hg17\|chr1 (148129431-148129229)
	403-605, gnl\|Mm7\|chr3 (94831046-94831248)