Non-Coding RNA Search

Ss1.1-rcbl0_015213.5

Sequence:


               
               AAAAATTAAAGAATGTGAAAAACTCACCTCAGAAAACCAAAGAGACCCCAGAGGGGGCAG
TTGTGTCTGGCCGTGGAAAAACAGTGGACCCAGATTGCAGCTCCACCCAACAGCTAGCTC
TCTTTGGAAATAATGAGTTTATGGTCTGAACTGGCAGATGTGTGTCCCTTTATGACTACA
GAGTGGTAAACACATCTCATCTTTGGGGCCTGTTCTCATCACCTGGTCCACAATGTCTAT
CCTAACTGTGGTCCTACCTCTTGCCCAAGCATACAACCAAGACCTTGTGTGCTATCTTCC
TGGGCCTCCTGCTGAATTGGAAAGGTTTCTTTGAAGCCTGCTAGGGATGGTGCCAGCTGT
GCCTTGGCTGCTGTATTTCACTAGAGATTTCACTAAGAAAAGCACCCAGGGCCTGGGGAT
TTGGGTCAGTTGTGGAGGTCTTTGTAGTTGCCTCTCCTCCCTCCTCTTTTCCCTTCCCAG
AGGTGAGTGTGGAACTGGGGAGGGGGACATTGTGGGCCAGAGGGACCCACTGATTTCTGA
CATTCAAAAAAAAATACAGAGATCTTTCTTAACCATGAAAGCAAAAGCCTTTGGGTTTAT
TTTGGGATAGTTAGGAGCTGGGGTAGAATATAATTTTTTTCCAAGGATTTATAAACAAAA
AGCCTAAGCCCTCTATTTTAGGATTTTTGAAAAACACTCCGTGTTATATTCTGGGGAAAG
TAAAAAAGTAATTGTCTCCATTAAGCCATCAGAGCATGTCTTGGACAGCTGTGGTTACAC
AATGAAGAAGAGAATATGTGTTTGGTTTTTTGAGGATGTTTGATGTCATAATAATCAATG
CTGGTTTAACTCCTAGTTAGTTCCTGCCAAATATATTGCATGGGCTGAAGTTCAGTAGCC
ACACTCTTCTTAAATTCCCCGATCCTAGAATCAGGTTCCTCTAATACCTTTTAAATGTCC
CAGAGACATGGTGATCCCTAAACGTGAGGGTTTAATCCTAATCCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATTAAAGAATGTGAAAAACTCACCTCAGAAAACCAAAGAGACCCCAGAGGGGGCAG
TTGTGTCTGGCCGTGGAAAAACAGTGGACCCAGATTGCAGCTCCACCCAACAGCTAGCTC
TCTTTGGAAATAATGAGTTTATGGTCTGAACTGGCAGATGTGTGTCCCTTTATGACTACA
GAGTGGTAAACACATCTCATCTTTGGGGCCTGTTCTCATCACCTGGTCCACAATGTCTAT
CCTAACTGTGGTCCTACCTCTTGCCCAAGCATACAACCAAGACCTTGTGTGCTATCTTCC
TGGGCCTCCTGCTGAATTGGAAAGGTTTCTTTGAAGCCTGCTAGGGATGGTGCCAGCTGT
GCCTTGGCTGCTGTATTTCACTAGAGATTTCACTAAGAAAAGCACCCAGGGCCTGGGGAT
TTGGGTCAGTTGTGGAGGTCTTTGTAGTTGCCTCTCCTCCCTCCTCTTTTCCCTTCCCAG
AGGTGAGTGTGGAACTGGGGAGGGGGACATTGTGGGCCAGAGGGACCCACTGATTTCTGA
CATTCAAAAAAAAATACAGAGATCTTTCTTAACCATGAAAGCAAAAGCCTTTGGGTTTAT
TTTGGGATAGTTAGGAGCTGGGGTAGAATATAATTTTTTTCCAAGGATTTATAAACAAAA
AGCCTAAGCCCTCTATTTTAGGATTTTTGAAAAACACTCCGTGTTATATTCTGGGGAAAG
TAAAAAAGTAATTGTCTCCATTAAGCCATCAGAGCATGTCTTGGACAGCTGTGGTTACAC
AATGAAGAAGAGAATATGTGTTTGGTTTTTTGAGGATGTTTGATGTCATAATAATCAATG
CTGGTTTAACTCCTAGTTAGTTCCTGCCAAATATATTGCATGGGCTGAAGTTCAGTAGCC
ACACTCTTCTTAAATTCCCCGATCCTAGAATCAGGTTCCTCTAATACCTTTTAAATGTCC
CAGAGACATGGTGATCCCTAAACGTGAGGGTTTAATCCTAATCCATCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.631624
               

               
               200-315, + strand, RNAz p=0.538984

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.631624
               

               
               200-315, + strand, RNAz p=0.538984

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr10 (11696744-11695756)
               

               
               1-1008, gnl|Hg17|chr15 (69906123-69905099)
               

               
               1-1008, gnl|Mm7|chr9 (59951810-59952732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr10 (11696744-11695756)
               

               
               1-1008, gnl|Hg17|chr15 (69906123-69905099)
               

               
               1-1008, gnl|Mm7|chr9 (59951810-59952732)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.286369)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               cbl (0.114797)

	40-159, - strand, RNAz p=0.631624
	200-315, + strand, RNAz p=0.538984

	1-1008, gnl\|bosTau2\|chr10 (11696744-11695756)
	1-1008, gnl\|Hg17\|chr15 (69906123-69905099)
	1-1008, gnl\|Mm7\|chr9 (59951810-59952732)