Non-Coding RNA Search

Ss1.1-rcbl0_015262.5

Sequence:


               
               ATGTGAACAACCAAAGACTACACAGGAAAGAGGAAAAAAAAATCTGGAAGTCTTAGGTGG
CTTCACCATACAGCCTTTGAATAAACGCAATCATACCCAACATATTTTTCTCTCCCCCCC
CCCTCGCTTTTGATTACTCTTCTGTTGAAATGATTTTTTTCCAAATCTTTACTGCTTAAG
ACGTAAATTATTTGTTTTGTTCTGTTCACAGTGCAAATTTTACTCACAGCTAAATGATCT
TCCCGAGTCCTTCTGTAATTACCTTGAAGAACTCCAACATCTATTGTAAGAAAATCAGGC
TTCAGAATATTTTGAGATGTAGATACATTATGGGTGGGAAGGTGGCCCCAGAGAGGACAC
ATTTAGGGGAGAGGGCTTTCTCAACTGAGCCAAACTGCTGAAAGTTGTTTTTTTGCAGAC
AATAGGCCTGCAGTATCCCTATCTAGAAAGATGGTATGATTATTATACTTTTTTTTTTGC
TTGTTTTTTGATTAGGTGGCAGCCTTGTGCCAAGAACTTGACATACTCTCATCTTTCAAA
AATCCTATAAAGTAGATACTACTAGCTTCATTTTACAGATAGGGAAAAGTATTCTCATTC
AGTGCTTACACTCACACAGCTTCTAGCTGTAAAATGATGTGGGCTATTTATCAAGCCTGT
TTCACGAAGTATTGATACCTGAAGTCAAATTTGGGTAGAATTTCTGGTGCCTCCCAGTCT
GTAGGCATCACAAATGTTCCTTCAATGCACTGCATTGGCTTCTATTGAAATTTTAGGAGA
ATTGACTTGAAGCTTATGTTTCCTTACCAAATGAGGCCACTTACTTTCTTTCCTAAGCCA
GAGTCCCTTTATTCAAGACAAAAATTTACTTTCTCCTTCCCTTCGTAGGTTGCCAAATTG
GAAGGAGAGTTTTGGAAACTTCAAATGAAGTACCCTTGCCAAATGGACTTCTCTTAATTA
CACTATTGTTCAAACTGATTGCTATCTTTTAGCTTTTTCCTGCTAAACAATGGACTAGTT
TCCACCTTAGTTGTTTAGAATTGTTTAATACCAGCCTTCATAAACCAAAAATGTGGGGCT
ACGCCTAATCCATATCACCTGGCAGGACTTTTCCCCTGCATCCCTTGAATTCCTCTGTGA
ATGGAGGAATCTTCCTCTGCATAGTAGGCTCTCATCATTAATTGGTTTGTATAGTTTTCT
ATGTCATTTGAGAGGCACTGATCTGTTCTGGGAAGGTTATATCTTATAAAAGATTAAGTA
ACAGTACATCTGACTACTACTTGGGTATTTTCTTCCATCCTGATAATTCTTTTTTCCTTT
TAATGATTTTTACTTTTTCCATTATAGTTGGTTTACATCCTGATAATTATCACTCAGGAC
CTCAAGGCCACCTCTGTGAAACTCCCTGGCTCTCCATTGGTGGGAGGAATGCCATTATTT
TGGTTCCAATTGTACTTTGCAGGTATCTCTGCCCTGGTAGTACTAACTCTGCTGTAAATG
GAACTATTTGATAGCATATTTTCTTCTTCCAAACTGAAAATCTGTGTTTCTCCCTACATA
TCTTCACCTATTGCACGCAGATCTTTATCTTGGGACTTTAGTTTGGAAAATTATCCATAT
TTCTTCTGTCTTTTGAAAGACATTACTTTCAGAAGTAATACCAACTTACAAAGAATTGAT
TCTGTAGGGCTCTAGAGGCACAAATCAGAAATGGTGCTATGTTTATATTTTAGGTTGTCT
GTCCTAAAAAAAAAAAATACCAGGTTACATGCCTCCAGAGTTCTTTCAAGTTGTGTGTTT
TCAAAATGATTGTCTGGATGTAAATACTGAAAAAACAACCAATGTGTATGAAAATATATT
TAACATGGCATTTAAAAACCATACCTACTAAACTGTTGGTGGTGGTGGTTTTTTCTCTTG
TTTCTTTTAAGTAAATTTGCATGTAAATGTTTGTACTGATTATGGAAGAGAAGACTTGGG
TACAAAATTGTAGGTATATGTGTCAGAAGGCCCCATAGCAGATGACTGTTGAGCATTCTC
TGTTATAATTGTCTGTCTTTTAAACTCCATGAGGGCATTGATCAATTACTGACCATTTTA
TTCTCTATGTATAGCACAATATGTGATAAATAACAGGACTTCAATAAATATTTGTACGAA
AGTGAAAACTGGATAATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGAACAACCAAAGACTACACAGGAAAGAGGAAAAAAAAATCTGGAAGTCTTAGGTGG
CTTCACCATACAGCCTTTGAATAAACGCAATCATACCCAACATATTTTTCTCTCCCCCCC
CCCTCGCTTTTGATTACTCTTCTGTTGAAATGATTTTTTTCCAAATCTTTACTGCTTAAG
ACGTAAATTATTTGTTTTGTTCTGTTCACAGTGCAAATTTTACTCACAGCTAAATGATCT
TCCCGAGTCCTTCTGTAATTACCTTGAAGAACTCCAACATCTATTGTAAGAAAATCAGGC
TTCAGAATATTTTGAGATGTAGATACATTATGGGTGGGAAGGTGGCCCCAGAGAGGACAC
ATTTAGGGGAGAGGGCTTTCTCAACTGAGCCAAACTGCTGAAAGTTGTTTTTTTGCAGAC
AATAGGCCTGCAGTATCCCTATCTAGAAAGATGGTATGATTATTATACTTTTTTTTTTGC
TTGTTTTTTGATTAGGTGGCAGCCTTGTGCCAAGAACTTGACATACTCTCATCTTTCAAA
AATCCTATAAAGTAGATACTACTAGCTTCATTTTACAGATAGGGAAAAGTATTCTCATTC
AGTGCTTACACTCACACAGCTTCTAGCTGTAAAATGATGTGGGCTATTTATCAAGCCTGT
TTCACGAAGTATTGATACCTGAAGTCAAATTTGGGTAGAATTTCTGGTGCCTCCCAGTCT
GTAGGCATCACAAATGTTCCTTCAATGCACTGCATTGGCTTCTATTGAAATTTTAGGAGA
ATTGACTTGAAGCTTATGTTTCCTTACCAAATGAGGCCACTTACTTTCTTTCCTAAGCCA
GAGTCCCTTTATTCAAGACAAAAATTTACTTTCTCCTTCCCTTCGTAGGTTGCCAAATTG
GAAGGAGAGTTTTGGAAACTTCAAATGAAGTACCCTTGCCAAATGGACTTCTCTTAATTA
CACTATTGTTCAAACTGATTGCTATCTTTTAGCTTTTTCCTGCTAAACAATGGACTAGTT
TCCACCTTAGTTGTTTAGAATTGTTTAATACCAGCCTTCATAAACCAAAAATGTGGGGCT
ACGCCTAATCCATATCACCTGGCAGGACTTTTCCCCTGCATCCCTTGAATTCCTCTGTGA
ATGGAGGAATCTTCCTCTGCATAGTAGGCTCTCATCATTAATTGGTTTGTATAGTTTTCT
ATGTCATTTGAGAGGCACTGATCTGTTCTGGGAAGGTTATATCTTATAAAAGATTAAGTA
ACAGTACATCTGACTACTACTTGGGTATTTTCTTCCATCCTGATAATTCTTTTTTCCTTT
TAATGATTTTTACTTTTTCCATTATAGTTGGTTTACATCCTGATAATTATCACTCAGGAC
CTCAAGGCCACCTCTGTGAAACTCCCTGGCTCTCCATTGGTGGGAGGAATGCCATTATTT
TGGTTCCAATTGTACTTTGCAGGTATCTCTGCCCTGGTAGTACTAACTCTGCTGTAAATG
GAACTATTTGATAGCATATTTTCTTCTTCCAAACTGAAAATCTGTGTTTCTCCCTACATA
TCTTCACCTATTGCACGCAGATCTTTATCTTGGGACTTTAGTTTGGAAAATTATCCATAT
TTCTTCTGTCTTTTGAAAGACATTACTTTCAGAAGTAATACCAACTTACAAAGAATTGAT
TCTGTAGGGCTCTAGAGGCACAAATCAGAAATGGTGCTATGTTTATATTTTAGGTTGTCT
GTCCTAAAAAAAAAAAATACCAGGTTACATGCCTCCAGAGTTCTTTCAAGTTGTGTGTTT
TCAAAATGATTGTCTGGATGTAAATACTGAAAAAACAACCAATGTGTATGAAAATATATT
TAACATGGCATTTAAAAACCATACCTACTAAACTGTTGGTGGTGGTGGTTTTTTCTCTTG
TTTCTTTTAAGTAAATTTGCATGTAAATGTTTGTACTGATTATGGAAGAGAAGACTTGGG
TACAAAATTGTAGGTATATGTGTCAGAAGGCCCCATAGCAGATGACTGTTGAGCATTCTC
TGTTATAATTGTCTGTCTTTTAAACTCCATGAGGGCATTGATCAATTACTGACCATTTTA
TTCTCTATGTATAGCACAATATGTGATAAATAACAGGACTTCAATAAATATTTGTACGAA
AGTGAAAACTGGATAATAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-479, - strand, RNAz p=0.998765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-479, - strand, RNAz p=0.998765

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-624, gnl|bosTau2|chr29 (1864793-1865430)
               

               
               2-624, gnl|Hg17|chr11 (87699010-87698377)
               

               
               2-624, gnl|Mm7|chr7 (84225947-84226664)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-624, gnl|bosTau2|chr29 (1864793-1865430)
               

               
               2-624, gnl|Hg17|chr11 (87699010-87698377)
               

               
               2-624, gnl|Mm7|chr7 (84225947-84226664)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               liv (0.731422)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               kid (0.389206)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cbl (0.344392)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               kid (0.389206)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cbl (0.344392)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	2-624, gnl\|bosTau2\|chr29 (1864793-1865430)
	2-624, gnl\|Hg17\|chr11 (87699010-87698377)
	2-624, gnl\|Mm7\|chr7 (84225947-84226664)

	liv (0.731422)
	lin (0.436808)
	spl (0.429553)
	amn (0.417711)
	ute (0.398353)
	kid (0.389206)
	fty (0.351679)
	ill (0.351185)
	cbl (0.344392)
	cty (0.31224)
	sme (0.305437)
	tra (0.246184)
	eje (0.197668)
	gul (0.177588)
	eye (0.170503)
	ski (0.146735)
	csk (0.140746)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)