Non-Coding RNA Search

Ss1.1-rcbl0_015293.5

Sequence:


               
               CTCATTTTAAAATGCTGAAAAGACTGGTTGAAGAAGCAACATTTAGTGAAATCCTCATTC
CTTTACAATCAGTCATGATACCTACTCTTCCATCAATTCCGGGTGCCCATGCTAACCACG
AACCATTTCCTGGGCATTGGGCCTATATTGCAGGCTTCGATGATACGGTAGAAATTCTTG
CTTCTCTTCAGAAACCAAAGAAAATCTCTTTAAAAGGATCTGATGGAAAGTTCTACATTA
TGATGTGTAAGCCAAAAGATGACTTGAGAAAGGATTGTAGACTAATGGAGTTCAATTCCT
TGATTAATAAGTGCTTAAGGAAAGATGCAGAATCTCGTAGAAGAGAACTTCATATTCGAA
CATATGCAGTTATTCCACTGAATGATGAATGTGGAATTATTGAATGGGTTAACAACACTG
CTGGCTTGAGACCTATTCTGACCAAACTATATAAGGAAAAGGGAGTTTATATGACAGGGA
AGGAACTTCGCCAGTGTATGCTACCAAAATCAGCAGCTTTATCTGAAAAACTCAAAGTAT
TCCGAGAATTTCTTCTGCCCAGGCATCCTCCTGTTTTCCATGAGTGGTTTCTGAGAACAT
TCCCTGATCCTACATCATGGTACAGTAGCAGATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTTTAAAATGCTGAAAAGACTGGTTGAAGAAGCAACATTTAGTGAAATCCTCATTC
CTTTACAATCAGTCATGATACCTACTCTTCCATCAATTCCGGGTGCCCATGCTAACCACG
AACCATTTCCTGGGCATTGGGCCTATATTGCAGGCTTCGATGATACGGTAGAAATTCTTG
CTTCTCTTCAGAAACCAAAGAAAATCTCTTTAAAAGGATCTGATGGAAAGTTCTACATTA
TGATGTGTAAGCCAAAAGATGACTTGAGAAAGGATTGTAGACTAATGGAGTTCAATTCCT
TGATTAATAAGTGCTTAAGGAAAGATGCAGAATCTCGTAGAAGAGAACTTCATATTCGAA
CATATGCAGTTATTCCACTGAATGATGAATGTGGAATTATTGAATGGGTTAACAACACTG
CTGGCTTGAGACCTATTCTGACCAAACTATATAAGGAAAAGGGAGTTTATATGACAGGGA
AGGAACTTCGCCAGTGTATGCTACCAAAATCAGCAGCTTTATCTGAAAAACTCAAAGTAT
TCCGAGAATTTCTTCTGCCCAGGCATCCTCCTGTTTTCCATGAGTGGTTTCTGAGAACAT
TCCCTGATCCTACATCATGGTACAGTAGCAGATCAG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-170, gnl|bosTau2|chr1 (78930382-78930551)
               

               
               1-170, gnl|canFam2|chr23 (41202054-41202285)
               

               
               1-170, gnl|danRer3|chr2 (7346768-7346991)
               

               
               1-170, gnl|dasNov1|scaffold_53900 (6069-5835)
               

               
               1-170, gnl|echTel1|scaffold_295421 (21732-21496)
               

               
               1-170, gnl|fr1|chrUn (137625709-137625938)
               

               
               1-170, gnl|galGal2|chr9 (3198216-3197988)
               

               
               1-170, gnl|hg17|chr3 (143667857-143668094)
               

               
               1-170, gnl|Hg17|chr3 (143668039-143667861)
               

               
               1-170, gnl|mm7|chr9 (95585188-95584961)
               

               
               1-170, gnl|Mm7|chr9 (95585013-95585182)
               

               
               1-170, gnl|monDom2|scaffold_28 (12956988-12957221)
               

               
               1-170, gnl|oryCun1|scaffold_137731 (4302-4074)
               

               
               1-170, gnl|panTro1|chr2 (146244496-146244733)
               

               
               1-170, gnl|rheMac2|chr2 (145400878-145400641)
               

               
               1-170, gnl|rn3|chr8_random (699406-699656)
               

               
               1-170, gnl|tetNig1|chr10 (8842564-8842356)
               

               
               1-170, gnl|xenTro1|scaffold_1123 (236975-236742)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr1 (78930382-78930551)
               

               
               1-170, gnl|canFam2|chr23 (41202054-41202285)
               

               
               1-170, gnl|danRer3|chr2 (7346768-7346991)
               

               
               1-170, gnl|dasNov1|scaffold_53900 (6069-5835)
               

               
               1-170, gnl|echTel1|scaffold_295421 (21732-21496)
               

               
               1-170, gnl|fr1|chrUn (137625709-137625938)
               

               
               1-170, gnl|galGal2|chr9 (3198216-3197988)
               

               
               1-170, gnl|hg17|chr3 (143667857-143668094)
               

               
               1-170, gnl|Hg17|chr3 (143668039-143667861)
               

               
               1-170, gnl|mm7|chr9 (95585188-95584961)
               

               
               1-170, gnl|Mm7|chr9 (95585013-95585182)
               

               
               1-170, gnl|monDom2|scaffold_28 (12956988-12957221)
               

               
               1-170, gnl|oryCun1|scaffold_137731 (4302-4074)
               

               
               1-170, gnl|panTro1|chr2 (146244496-146244733)
               

               
               1-170, gnl|rheMac2|chr2 (145400878-145400641)
               

               
               1-170, gnl|rn3|chr8_random (699406-699656)
               

               
               1-170, gnl|tetNig1|chr10 (8842564-8842356)
               

               
               1-170, gnl|xenTro1|scaffold_1123 (236975-236742)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	1-170, gnl\|bosTau2\|chr1 (78930382-78930551)
	1-170, gnl\|canFam2\|chr23 (41202054-41202285)
	1-170, gnl\|danRer3\|chr2 (7346768-7346991)
	1-170, gnl\|dasNov1\|scaffold_53900 (6069-5835)
	1-170, gnl\|echTel1\|scaffold_295421 (21732-21496)
	1-170, gnl\|fr1\|chrUn (137625709-137625938)
	1-170, gnl\|galGal2\|chr9 (3198216-3197988)
	1-170, gnl\|hg17\|chr3 (143667857-143668094)
	1-170, gnl\|Hg17\|chr3 (143668039-143667861)
	1-170, gnl\|mm7\|chr9 (95585188-95584961)
	1-170, gnl\|Mm7\|chr9 (95585013-95585182)
	1-170, gnl\|monDom2\|scaffold_28 (12956988-12957221)
	1-170, gnl\|oryCun1\|scaffold_137731 (4302-4074)
	1-170, gnl\|panTro1\|chr2 (146244496-146244733)
	1-170, gnl\|rheMac2\|chr2 (145400878-145400641)
	1-170, gnl\|rn3\|chr8_random (699406-699656)
	1-170, gnl\|tetNig1\|chr10 (8842564-8842356)
	1-170, gnl\|xenTro1\|scaffold_1123 (236975-236742)