Non-Coding RNA Search

Ss1.1-rcbl0_015503.5

Sequence:


               
               CCAAAAGCTACAGAGGTCCAACTATTTCTTTCTCCAAGGCACATTTCATGGTCTTTGGTG
GTCTTTTTAGCTCCCCATTCTTTTTCTTCTGTTTCATTTTGGCTGATGTTTTCTACCTGT
GGCTTTTTCAACAGAGTTTGAAAATTCTCAGAGCAATTATCTAGATGAACTGGTTTTGAT
TTTCTTTTGGGTTGTATTCCTAGATGCCTTCTTCCAAAAAGTGTCTTCTAAAATAGCAAA
ATGATTTTATCATTAAAGCAGCACTAATCTTAAAAAACAAAACAAAACAAAACAATCCCT
AGTAACTTTGTTCATAATTTTATTCCTTCCTTTAAAAATAAGATGATTAAAGAAAACCTG
GGATAGTAGCAGTGGAAGAGGCATTTGAATTACACTTAATAGGAAGAATTAGTCAAATGC
AAGAATAAATTTCACGGAGCCAGGACATAGGATGTGGCTGGGTGTGCACTGAGGAAGGCC
AAAGAAAGTAGAGAAGAACAAGCAATAATAACTCCAAGGCTTTGGAGACTGGGAACTTGG
AAAATAGTGATAACATTAACAGAAACAAAGGAGGGGCAAGTTTGGCTAGAAAAATGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAAGCTACAGAGGTCCAACTATTTCTTTCTCCAAGGCACATTTCATGGTCTTTGGTG
GTCTTTTTAGCTCCCCATTCTTTTTCTTCTGTTTCATTTTGGCTGATGTTTTCTACCTGT
GGCTTTTTCAACAGAGTTTGAAAATTCTCAGAGCAATTATCTAGATGAACTGGTTTTGAT
TTTCTTTTGGGTTGTATTCCTAGATGCCTTCTTCCAAAAAGTGTCTTCTAAAATAGCAAA
ATGATTTTATCATTAAAGCAGCACTAATCTTAAAAAACAAAACAAAACAAAACAATCCCT
AGTAACTTTGTTCATAATTTTATTCCTTCCTTTAAAAATAAGATGATTAAAGAAAACCTG
GGATAGTAGCAGTGGAAGAGGCATTTGAATTACACTTAATAGGAAGAATTAGTCAAATGC
AAGAATAAATTTCACGGAGCCAGGACATAGGATGTGGCTGGGTGTGCACTGAGGAAGGCC
AAAGAAAGTAGAGAAGAACAAGCAATAATAACTCCAAGGCTTTGGAGACTGGGAACTTGG
AAAATAGTGATAACATTAACAGAAACAAAGGAGGGGCAAGTTTGGCTAGAAAAATGAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-193, + strand, RNAz p=0.972296

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-193, + strand, RNAz p=0.972296

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-255, gnl|bosTau2|chr10 (47905089-47905348)
               

               
               1-255, gnl|Hg17|chr10 (115602696-115602956)
               

               
               1-255, gnl|Mm7|chr19 (56462765-56463014)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-255, gnl|bosTau2|chr10 (47905089-47905348)
               

               
               1-255, gnl|Hg17|chr10 (115602696-115602956)
               

               
               1-255, gnl|Mm7|chr19 (56462765-56463014)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	1-255, gnl\|bosTau2\|chr10 (47905089-47905348)
	1-255, gnl\|Hg17\|chr10 (115602696-115602956)
	1-255, gnl\|Mm7\|chr19 (56462765-56463014)