Non-Coding RNA Search

Ss1.1-rcbl0_015722.5

Sequence:


               
               GAAAGGACACTAATAGGGTAAATCCAAGCACTAGCTACTTTGGGGCCACTTCCTAGAATT
TAGAAGAGAAGCACTTTTTAAGACTGCAACTGGAGAATGCGGTAGAAGATCTATGGAGGA
GATTCCAGGATGCACTCAAGAATTACACTGATGCCACAGAGGATCGAAAGATCGCCTTCG
AGACTCTAAAGGTGAAGGACGAGAGGAGCTCCAAAGAGATTGAAGCACAGATGAAAAAAA
TACAGAGACTACAGGATTCCATAATTATTTTAAAAGGCAAGATCATGGTGCACAGCCGCG
AGAGTGAAGAACAGAACCAGGACATTCGTGATGACAAGGAGTTGGTCCTTGTACAACTGC
AAAAACTGAAGGCCCAAAGGACTCAGGCCCGGGGAGTATCACAGGAGAACTTGGTCAGAC
TCACCCTGGAAAGTAATGCCACCCTCAAGGCCCTGAGGAAGACTGTCGACAAGGGTGAAA
AGATCCTTAAACTTGCTGAAATATGTAGGAAGTTTGAAACAGAGGAAGAAAAAGTGCTAC
CTTTCTATTCTTCAGTATTGACTCCCGAGGAGCAGGAAGAAATAGAGAAAACTGACCCAG
AGGAGTTTAATGAGGAGCTTGCAAAGGCAATAGTAGCTACACAGGCATGGAGAATTTCTG
GAAAAGATACAACAAAGTGAAACTGGAGCAACTGAGTCTCCAACACAGACGCACCCAGTT
GTTAAAAATCAACGAGAAGCTGCGGGAGATGCTCAGGCAGTACTTGGATGGCATCTCAGT
GAGTGATGAGGTGCTGAGCCAGCTCAACCCACTCTTCATTGTCAACCACCGCAGCAACTT
ACCCCGGCCCTTGTCCACACCTACAGCCGAACCAGGTGACAAAAAACCTCCAACCACTTA
CAACATCATTGAAGCTGCCCATGTGATCTCCCACATCCTGTGATACAAGGAGAAAATACC
TTTTCAACTCCCAGAGAATGTTTTGAGAGACCCGAGGACTTTGCTATTAAAAATCTCCAT
GGAGTTTATGAGCTCCTCACATCTTTGCAGTGGTAGATAGAAGAGTCTATCTGGAGGACA
CTAGGAGTACAGCGGCCTAGGGAGTGGAAAGAATAGCCAGGCAACTACCAGGAGGCTTCC
TTCGCAGTGATTTACTGCTCCTCTGAGTCAGGACACCTTGAGAACCCAGAGATCCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGACACTAATAGGGTAAATCCAAGCACTAGCTACTTTGGGGCCACTTCCTAGAATT
TAGAAGAGAAGCACTTTTTAAGACTGCAACTGGAGAATGCGGTAGAAGATCTATGGAGGA
GATTCCAGGATGCACTCAAGAATTACACTGATGCCACAGAGGATCGAAAGATCGCCTTCG
AGACTCTAAAGGTGAAGGACGAGAGGAGCTCCAAAGAGATTGAAGCACAGATGAAAAAAA
TACAGAGACTACAGGATTCCATAATTATTTTAAAAGGCAAGATCATGGTGCACAGCCGCG
AGAGTGAAGAACAGAACCAGGACATTCGTGATGACAAGGAGTTGGTCCTTGTACAACTGC
AAAAACTGAAGGCCCAAAGGACTCAGGCCCGGGGAGTATCACAGGAGAACTTGGTCAGAC
TCACCCTGGAAAGTAATGCCACCCTCAAGGCCCTGAGGAAGACTGTCGACAAGGGTGAAA
AGATCCTTAAACTTGCTGAAATATGTAGGAAGTTTGAAACAGAGGAAGAAAAAGTGCTAC
CTTTCTATTCTTCAGTATTGACTCCCGAGGAGCAGGAAGAAATAGAGAAAACTGACCCAG
AGGAGTTTAATGAGGAGCTTGCAAAGGCAATAGTAGCTACACAGGCATGGAGAATTTCTG
GAAAAGATACAACAAAGTGAAACTGGAGCAACTGAGTCTCCAACACAGACGCACCCAGTT
GTTAAAAATCAACGAGAAGCTGCGGGAGATGCTCAGGCAGTACTTGGATGGCATCTCAGT
GAGTGATGAGGTGCTGAGCCAGCTCAACCCACTCTTCATTGTCAACCACCGCAGCAACTT
ACCCCGGCCCTTGTCCACACCTACAGCCGAACCAGGTGACAAAAAACCTCCAACCACTTA
CAACATCATTGAAGCTGCCCATGTGATCTCCCACATCCTGTGATACAAGGAGAAAATACC
TTTTCAACTCCCAGAGAATGTTTTGAGAGACCCGAGGACTTTGCTATTAAAAATCTCCAT
GGAGTTTATGAGCTCCTCACATCTTTGCAGTGGTAGATAGAAGAGTCTATCTGGAGGACA
CTAGGAGTACAGCGGCCTAGGGAGTGGAAAGAATAGCCAGGCAACTACCAGGAGGCTTCC
TTCGCAGTGATTTACTGCTCCTCTGAGTCAGGACACCTTGAGAACCCAGAGATCCTGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15207955|dbj|BAB63002.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15207955|dbj|BAB63002.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, + strand, RNAz p=0.532762
               

               
               663-782, + strand, RNAz p=0.668515

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.532762
               

               
               663-782, + strand, RNAz p=0.668515

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-255, gnl|bosTau2|chr5 (26209130-26208876)
               

               
               1-255, gnl|Hg17|chr12 (47598269-47598523)
               

               
               1-255, gnl|Mm7|chr15 (98706038-98706282)
               


               
               625-1111, gnl|bosTau2|chr5 (26207580-26207092)
               

               
               625-1111, gnl|Hg17|chr12 (47601216-47601696)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-255, gnl|bosTau2|chr5 (26209130-26208876)
               

               
               1-255, gnl|Hg17|chr12 (47598269-47598523)
               

               
               1-255, gnl|Mm7|chr15 (98706038-98706282)
               


               
               625-1111, gnl|bosTau2|chr5 (26207580-26207092)
               

               
               625-1111, gnl|Hg17|chr12 (47601216-47601696)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	80-199, + strand, RNAz p=0.532762
	663-782, + strand, RNAz p=0.668515

	1-255, gnl\|bosTau2\|chr5 (26209130-26208876)
	1-255, gnl\|Hg17\|chr12 (47598269-47598523)
	1-255, gnl\|Mm7\|chr15 (98706038-98706282)

	625-1111, gnl\|bosTau2\|chr5 (26207580-26207092)
	625-1111, gnl\|Hg17\|chr12 (47601216-47601696)