Ss1.1-rcbl0_015739.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTCGTTGGGATCAAAGGTTATTTGCCCTGGTGTTGCGTTTGCCTGGATTGGCTTCTAC TGAACCCGAGCAGCTAGGGAGTGTACCCACTGATGAATCTGCCATCACACAGATGTGCGA AGTCACAGGAGGTCGCTCCTACTGTGTTAGAACACAACGAATGTTGAATCAATGCTTAGA ATCCTTAGTTCAAAAAGTTCAGAGTGGTGTTGTGATTAACTTTGAAAAAACAGGACCAGA TCCACTTCCTATTGGAGAAGATGGACTTATGGACTCATCCAGGCCAAGCAATTCATTGGC TTCTCAACCATGGCATAGTTGTCATAAGCTGATTTACGTACGACCCAACTCTAAAACCGG TGTTCCTGTTGGACACTGGCCAATTCCAGAATCTTTTTGGCCAGATCAGAATTTACCTTC ACTACCTCCGCGAACCTCTCATCCTGTCGTGAGGTTCTCTTGCGTAGATTGTGAGCCAAT GGTAATAGACAAACTTCCCTTTGACAAATATGAACTTGAACCTTCACCCTTAACTCAGTA CATCCTGGAACGAAAGTCTCCCCATACCTGCTGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTCGTTGGGATCAAAGGTTATTTGCCCTGGTGTTGCGTTTGCCTGGATTGGCTTCTAC TGAACCCGAGCAGCTAGGGAGTGTACCCACTGATGAATCTGCCATCACACAGATGTGCGA AGTCACAGGAGGTCGCTCCTACTGTGTTAGAACACAACGAATGTTGAATCAATGCTTAGA ATCCTTAGTTCAAAAAGTTCAGAGTGGTGTTGTGATTAACTTTGAAAAAACAGGACCAGA TCCACTTCCTATTGGAGAAGATGGACTTATGGACTCATCCAGGCCAAGCAATTCATTGGC TTCTCAACCATGGCATAGTTGTCATAAGCTGATTTACGTACGACCCAACTCTAAAACCGG TGTTCCTGTTGGACACTGGCCAATTCCAGAATCTTTTTGGCCAGATCAGAATTTACCTTC ACTACCTCCGCGAACCTCTCATCCTGTCGTGAGGTTCTCTTGCGTAGATTGTGAGCCAAT GGTAATAGACAAACTTCCCTTTGACAAATATGAACTTGAACCTTCACCCTTAACTCAGTA CATCCTGGAACGAAAGTCTCCCCATACCTGCTGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 302-421, + strand, RNAz p=0.508936 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 302-421, + strand, RNAz p=0.508936 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr3 (40251795-40251927) | |
| 1-133, gnl|canFam2|chrX (109089819-109089976) | |
| 1-133, gnl|danRer3|chr14 (52877831-52877988) | |
| 1-133, gnl|dasNov1|scaffold_8496 (3962-3805) | |
| 1-133, gnl|echTel1|scaffold_303619 (4911-5068) | |
| 1-133, gnl|fr1|chrUn (108438286-108438441) | |
| 1-133, gnl|galGal2|chr4 (3938267-3938424) | |
| 1-133, gnl|hg17|chrX (134406177-134406334) | |
| 1-133, gnl|Hg17|chrX (134406200-134406332) | |
| 1-133, gnl|loxAfr1|scaffold_14627 (36585-36428) | |
| 1-133, gnl|mm7|chrX (51961628-51961785) | |
| 1-133, gnl|Mm7|chrX (51961651-51961783) | |
| 1-133, gnl|monDom2|scaffold_98 (76963-76806) | |
| 1-133, gnl|rheMac2|chrX (133788668-133788825) | |
| 1-133, gnl|rn3|chr15 (41981590-41981433) | |
| 1-133, gnl|tetNig1|chr2 (18288741-18288584) | |
| 1-133, gnl|xenTro1|scaffold_212 (355795-355638) | |
| 302-424, gnl|bosTau2|chr12 (10579662-10579540) | |
| 302-424, gnl|Hg17|chr13 (50859645-50859523) | |
| 302-424, gnl|Mm7|chr14 (57580020-57579898) | |
| 455-576, gnl|bosTau2|chr12 (10575931-10575810) | |
| 455-576, gnl|canFam2|chr22 (3560073-3559922) | |
| 455-576, gnl|canFam2|chr22 (3560046-3559892) | |
| 455-576, gnl|danRer3|chr16 (20376736-20376883) | |
| 455-576, gnl|danRer3|chr16 (20376759-20376913) | |
| 455-576, gnl|dasNov1|scaffold_165758 (4208-4083) | |
| 455-576, gnl|dasNov1|scaffold_165758 (4207-4053) | |
| 455-576, gnl|echTel1|scaffold_321729 (6614-6775) | |
| 455-576, gnl|echTel1|scaffold_321729 (6650-6805) | |
| 455-576, gnl|fr1|chrUn (212974027-212974172) | |
| 455-576, gnl|fr1|chrUn (212974048-212974202) | |
| 455-576, gnl|galGal2|chr1 (162213337-162213487) | |
| 455-576, gnl|galGal2|chr1 (162213364-162213517) | |
| 455-576, gnl|hg17|chr13 (50855696-50855849) | |
| 455-576, gnl|Hg17|chr13 (50855848-50855727) | |
| 455-576, gnl|hg17|chr5 (39756449-39756601) | |
| 455-576, gnl|loxAfr1|scaffold_14627 (8664-8816) | |
| 455-576, gnl|loxAfr1|scaffold_14627 (8692-8846) | |
| 455-576, gnl|mm7|chr14 (57575652-57575804) | |
| 455-576, gnl|mm7|chr14 (57575680-57575834) | |
| 455-576, gnl|Mm7|chr14 (57575803-57575682) | |
| 455-576, gnl|monDom2|scaffold_15 (55083466-55083318) | |
| 455-576, gnl|monDom2|scaffold_15 (55083442-55083288) | |
| 455-576, gnl|oryCun1|scaffold_204376 (3974-4126) | |
| 455-576, gnl|oryCun1|scaffold_204376 (4002-4156) | |
| 455-576, gnl|panTro1|chr14_random (17012573-17012726) | |
| 455-576, gnl|panTro1|chr4 (76967024-76966872) | |
| 455-576, gnl|rheMac2|chr17 (30208680-30208833) | |
| 455-576, gnl|rheMac2|chr6 (39542822-39542976) | |
| 455-576, gnl|rn3|chr15 (41974824-41974977) | |
| 455-576, gnl|rn3|chr15 (41974853-41975007) | |
| 455-576, gnl|tetNig1|chr2 (18286684-18286834) | |
| 455-576, gnl|tetNig1|chr2 (18286710-18286863) | |
| 455-576, gnl|xenTro1|scaffold_223 (1315320-1315163) | |
| 455-576, gnl|xenTro1|scaffold_223 (1315287-1315133) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr3 (40251795-40251927) | |
| 1-133, gnl|canFam2|chrX (109089819-109089976) | |
| 1-133, gnl|danRer3|chr14 (52877831-52877988) | |
| 1-133, gnl|dasNov1|scaffold_8496 (3962-3805) | |
| 1-133, gnl|echTel1|scaffold_303619 (4911-5068) | |
| 1-133, gnl|fr1|chrUn (108438286-108438441) | |
| 1-133, gnl|galGal2|chr4 (3938267-3938424) | |
| 1-133, gnl|hg17|chrX (134406177-134406334) | |
| 1-133, gnl|Hg17|chrX (134406200-134406332) | |
| 1-133, gnl|loxAfr1|scaffold_14627 (36585-36428) | |
| 1-133, gnl|mm7|chrX (51961628-51961785) | |
| 1-133, gnl|Mm7|chrX (51961651-51961783) | |
| 1-133, gnl|monDom2|scaffold_98 (76963-76806) | |
| 1-133, gnl|rheMac2|chrX (133788668-133788825) | |
| 1-133, gnl|rn3|chr15 (41981590-41981433) | |
| 1-133, gnl|tetNig1|chr2 (18288741-18288584) | |
| 1-133, gnl|xenTro1|scaffold_212 (355795-355638) | |
| 302-424, gnl|bosTau2|chr12 (10579662-10579540) | |
| 302-424, gnl|Hg17|chr13 (50859645-50859523) | |
| 302-424, gnl|Mm7|chr14 (57580020-57579898) | |
| 455-576, gnl|bosTau2|chr12 (10575931-10575810) | |
| 455-576, gnl|canFam2|chr22 (3560073-3559922) | |
| 455-576, gnl|canFam2|chr22 (3560046-3559892) | |
| 455-576, gnl|danRer3|chr16 (20376736-20376883) | |
| 455-576, gnl|danRer3|chr16 (20376759-20376913) | |
| 455-576, gnl|dasNov1|scaffold_165758 (4208-4083) | |
| 455-576, gnl|dasNov1|scaffold_165758 (4207-4053) | |
| 455-576, gnl|echTel1|scaffold_321729 (6614-6775) | |
| 455-576, gnl|echTel1|scaffold_321729 (6650-6805) | |
| 455-576, gnl|fr1|chrUn (212974027-212974172) | |
| 455-576, gnl|fr1|chrUn (212974048-212974202) | |
| 455-576, gnl|galGal2|chr1 (162213337-162213487) | |
| 455-576, gnl|galGal2|chr1 (162213364-162213517) | |
| 455-576, gnl|hg17|chr13 (50855696-50855849) | |
| 455-576, gnl|Hg17|chr13 (50855848-50855727) | |
| 455-576, gnl|hg17|chr5 (39756449-39756601) | |
| 455-576, gnl|loxAfr1|scaffold_14627 (8664-8816) | |
| 455-576, gnl|loxAfr1|scaffold_14627 (8692-8846) | |
| 455-576, gnl|mm7|chr14 (57575652-57575804) | |
| 455-576, gnl|mm7|chr14 (57575680-57575834) | |
| 455-576, gnl|Mm7|chr14 (57575803-57575682) | |
| 455-576, gnl|monDom2|scaffold_15 (55083466-55083318) | |
| 455-576, gnl|monDom2|scaffold_15 (55083442-55083288) | |
| 455-576, gnl|oryCun1|scaffold_204376 (3974-4126) | |
| 455-576, gnl|oryCun1|scaffold_204376 (4002-4156) | |
| 455-576, gnl|panTro1|chr14_random (17012573-17012726) | |
| 455-576, gnl|panTro1|chr4 (76967024-76966872) | |
| 455-576, gnl|rheMac2|chr17 (30208680-30208833) | |
| 455-576, gnl|rheMac2|chr6 (39542822-39542976) | |
| 455-576, gnl|rn3|chr15 (41974824-41974977) | |
| 455-576, gnl|rn3|chr15 (41974853-41975007) | |
| 455-576, gnl|tetNig1|chr2 (18286684-18286834) | |
| 455-576, gnl|tetNig1|chr2 (18286710-18286863) | |
| 455-576, gnl|xenTro1|scaffold_223 (1315320-1315163) | |
| 455-576, gnl|xenTro1|scaffold_223 (1315287-1315133) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) |