Non-Coding RNA Search

Ss1.1-rcbl0_016219.5

Sequence:


               
               AGAATACCACAAATGATAAACCGGGGTGGGGGTGGGGAGAGTGGGACGTGTTGGTGAAGA
TGTTTTTATAGCAGGTAGCAAATTCATTTGAAGATAAACTTAACATGTAGTCTTTTAGAT
GGAAGCTTAGTAGGGAACATCTGACAGCTGGCTGTAGTCACTAGGCTACTTGTAAACATC
CACTTTTCTCCTTACAACTCAAGATCATCTCCCACTGAGGTGCAGCCCATACTGAAGTAT
TTGTTTTGATAGCTTTTGAAAGGTAGGAAAATGCCTCAGGGCTTTGCCTGTATTGTATGG
AAGCCACTCTAAGAGAGGAAGTATGTTGTGGAGCAGTTCCAGTTCAATGTTACCAGCATG
GCAACTGGAGGGAACAAGTTACGTCTGGTAGGAAAACAGGGCACTGAGCTGTGTCTGGCC
TTCTATATCTGATCACCATGTGCATGTTCAGTTGCATGGTACCTGGGTATTCAAAAGAGG
CAGGGATACTCCATATAAAATTCTACCAATCTCTCTTTCACACACACACACACACACACA
CACACACACACACACACAACTCCTAAAATTCTACCAATCTCTCTTTCACACACACACACA
CACACACACACACACACACACCCCTCACAACATTCAAATCAAACAACAGAGTTTGTCCAC
GCTCTCATCTACTTGTAACTGAAGCAAGAGAATCAGTCAGAGCTACTTTAGAGTGTTTTT
TTGTAAAGAGTAAGTTATACAACGGAATCATCTTAGTAAATAAAAGTGTTCTTTTCAAGA
GAGCTAAAACAAAGTATTTGATTTTTTAAAGGCTCCTTTCTCTCTAAAAGGATCCTGAAA
TCAGACAACTAACTTAGCAGAATGATTTGCAACTAATCAACTTAAAAGATCTAACTCTCA
CCTCTTGTGCCCTAAACTATGTATCCTCTCGTTTTTCTCAGTTTAGCTAGGAAATTAACC
ACTAGTTATTAGCTGGAAAATATTTTAAGAAAATGGAGTAAAGGTTTGAGAAAAATAAAT
ATTAATACATAGCATAAGAGAAATAAAATTTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATACCACAAATGATAAACCGGGGTGGGGGTGGGGAGAGTGGGACGTGTTGGTGAAGA
TGTTTTTATAGCAGGTAGCAAATTCATTTGAAGATAAACTTAACATGTAGTCTTTTAGAT
GGAAGCTTAGTAGGGAACATCTGACAGCTGGCTGTAGTCACTAGGCTACTTGTAAACATC
CACTTTTCTCCTTACAACTCAAGATCATCTCCCACTGAGGTGCAGCCCATACTGAAGTAT
TTGTTTTGATAGCTTTTGAAAGGTAGGAAAATGCCTCAGGGCTTTGCCTGTATTGTATGG
AAGCCACTCTAAGAGAGGAAGTATGTTGTGGAGCAGTTCCAGTTCAATGTTACCAGCATG
GCAACTGGAGGGAACAAGTTACGTCTGGTAGGAAAACAGGGCACTGAGCTGTGTCTGGCC
TTCTATATCTGATCACCATGTGCATGTTCAGTTGCATGGTACCTGGGTATTCAAAAGAGG
CAGGGATACTCCATATAAAATTCTACCAATCTCTCTTTCACACACACACACACACACACA
CACACACACACACACACAACTCCTAAAATTCTACCAATCTCTCTTTCACACACACACACA
CACACACACACACACACACACCCCTCACAACATTCAAATCAAACAACAGAGTTTGTCCAC
GCTCTCATCTACTTGTAACTGAAGCAAGAGAATCAGTCAGAGCTACTTTAGAGTGTTTTT
TTGTAAAGAGTAAGTTATACAACGGAATCATCTTAGTAAATAAAAGTGTTCTTTTCAAGA
GAGCTAAAACAAAGTATTTGATTTTTTAAAGGCTCCTTTCTCTCTAAAAGGATCCTGAAA
TCAGACAACTAACTTAGCAGAATGATTTGCAACTAATCAACTTAAAAGATCTAACTCTCA
CCTCTTGTGCCCTAAACTATGTATCCTCTCGTTTTTCTCAGTTTAGCTAGGAAATTAACC
ACTAGTTATTAGCTGGAAAATATTTTAAGAAAATGGAGTAAAGGTTTGAGAAAAATAAAT
ATTAATACATAGCATAAGAGAAATAAAATTTTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q64PI9_BACFR

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q64PI9_BACFR

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-540, gnl|bosTau2|chr16 (44639393-44638842)
               

               
               1-540, gnl|Hg17|chr1 (171695253-171694693)
               

               
               1-540, gnl|Mm7|chr1 (160182068-160182636)
               


               
               895-1056, gnl|bosTau2|chr16 (44638530-44638369)
               

               
               895-1056, gnl|Hg17|chr1 (171694351-171694201)
               

               
               895-1056, gnl|Mm7|chr1 (160183117-160183258)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr16 (44639393-44638842)
               

               
               1-540, gnl|Hg17|chr1 (171695253-171694693)
               

               
               1-540, gnl|Mm7|chr1 (160182068-160182636)
               


               
               895-1056, gnl|bosTau2|chr16 (44638530-44638369)
               

               
               895-1056, gnl|Hg17|chr1 (171694351-171694201)
               

               
               895-1056, gnl|Mm7|chr1 (160183117-160183258)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cbl (0.229595)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	1-540, gnl\|bosTau2\|chr16 (44639393-44638842)
	1-540, gnl\|Hg17\|chr1 (171695253-171694693)
	1-540, gnl\|Mm7\|chr1 (160182068-160182636)

	895-1056, gnl\|bosTau2\|chr16 (44638530-44638369)
	895-1056, gnl\|Hg17\|chr1 (171694351-171694201)
	895-1056, gnl\|Mm7\|chr1 (160183117-160183258)

	cbl (0.229595)
	fhi (0.169578)
	fat (0.147427)
	ute (0.132784)
	ova (0.129132)
	ebs (0.118301)
	med (0.116252)