Non-Coding RNA Search

Ss1.1-rcbl0_016232.5

Sequence:


               
               GAGCAAATTCTTTTTGATATTTAGTATGAATCATGATTGTGGGACCAGTATTCAGTTTTA
AATAATTTCAGTTATTGTTGCCATTTTTGTACTTGTACCTCCATATTTGATGAACGAATT
CTATAAATTTTGAGAGAATCAAGAATATGCTGCACTCACTAAGTAATGTAAAATAAATTC
ATGCCACCTTCCATCCAAAGATGTGAAGTTTTGAGAAATGTTTAAATCCCACTGATGTTT
AAATATGTGGCTATCACTTGTGCATATCTTAACAGTTTCTAGTCTCTTTATTTAAAATCA
ATGTAGCCTCTTCCTCATCGGCATCATTGTTTGTTTCAAGCAGTACTGTCCTCCTATGTT
TTTGGATAGTCTCACCTCACCCTTAACCGCAAGCAGTACGTCTGTCACCACCACCAGCCC
CCATGAAAGCACTACTCATGTTAGTTCATCCAGCAGCAGAAGTGAGACAGGGGTCATAAC
CAGCAGTGGAAGTAACATTCCCGACATCATCTCATTGGACTAAAAGGAGGACTCACTCGA
TTCTAGGAATCATTCGTCAAAGCTGCTTTCTTGGATCCCTGATCCGCGGAAGCTATTTTT
TGGTAACAGTTACTTTGATATTTATTGAAACGTCAAATGGATTCTTTTGCCTTTCGAGAG
ATGAACACAGATGACTGCAGCAAGAACCACATGACACGCAAGGATTTTTCTTATCCCTGC
TGTACTCTGAGCATCAGACACATCCAGCCATAACTGTATCTTCTTGAGAGATGGATTTCA
ATTTCATACGTTACTGGATGGATTCTACAAATCAGTTAATTTTTTTGTTGTAATAAACAG
CAATAAAATTATGTAAATATTCAAGTAAACGTTTTTCTAATTAAAAAGAATGTAATCAGT
GGTTCTAAAATGACAGCAATCTTTGTTAAACCTGATGTGAAGGAAAAAATATATGGAAAG
ACATTAATGTTTGCCGAATGAGTCCGTTCCATGGAGATTTGTTCTCTTTCGTTGAAGTAA
TGAAGTCTTGATAAGTGGCCAAAGCTTGGGTTCGTTCCACTTTTCTTCCTGCAGTTCCAC
TTTCCTTCCTGATTCCATCCAAGAAAAATGGCCCTTGTGTTACACATTTTTCCCCGTGTC
ATTTACATTTGATGCTGTGTGCTAATGAATGCAGAGTGAGGTTCTGGGATTTGGTTGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAAATTCTTTTTGATATTTAGTATGAATCATGATTGTGGGACCAGTATTCAGTTTTA
AATAATTTCAGTTATTGTTGCCATTTTTGTACTTGTACCTCCATATTTGATGAACGAATT
CTATAAATTTTGAGAGAATCAAGAATATGCTGCACTCACTAAGTAATGTAAAATAAATTC
ATGCCACCTTCCATCCAAAGATGTGAAGTTTTGAGAAATGTTTAAATCCCACTGATGTTT
AAATATGTGGCTATCACTTGTGCATATCTTAACAGTTTCTAGTCTCTTTATTTAAAATCA
ATGTAGCCTCTTCCTCATCGGCATCATTGTTTGTTTCAAGCAGTACTGTCCTCCTATGTT
TTTGGATAGTCTCACCTCACCCTTAACCGCAAGCAGTACGTCTGTCACCACCACCAGCCC
CCATGAAAGCACTACTCATGTTAGTTCATCCAGCAGCAGAAGTGAGACAGGGGTCATAAC
CAGCAGTGGAAGTAACATTCCCGACATCATCTCATTGGACTAAAAGGAGGACTCACTCGA
TTCTAGGAATCATTCGTCAAAGCTGCTTTCTTGGATCCCTGATCCGCGGAAGCTATTTTT
TGGTAACAGTTACTTTGATATTTATTGAAACGTCAAATGGATTCTTTTGCCTTTCGAGAG
ATGAACACAGATGACTGCAGCAAGAACCACATGACACGCAAGGATTTTTCTTATCCCTGC
TGTACTCTGAGCATCAGACACATCCAGCCATAACTGTATCTTCTTGAGAGATGGATTTCA
ATTTCATACGTTACTGGATGGATTCTACAAATCAGTTAATTTTTTTGTTGTAATAAACAG
CAATAAAATTATGTAAATATTCAAGTAAACGTTTTTCTAATTAAAAAGAATGTAATCAGT
GGTTCTAAAATGACAGCAATCTTTGTTAAACCTGATGTGAAGGAAAAAATATATGGAAAG
ACATTAATGTTTGCCGAATGAGTCCGTTCCATGGAGATTTGTTCTCTTTCGTTGAAGTAA
TGAAGTCTTGATAAGTGGCCAAAGCTTGGGTTCGTTCCACTTTTCTTCCTGCAGTTCCAC
TTTCCTTCCTGATTCCATCCAAGAAAAATGGCCCTTGTGTTACACATTTTTCCCCGTGTC
ATTTACATTTGATGCTGTGTGCTAATGAATGCAGAGTGAGGTTCTGGGATTTGGTTGTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               368-1069, gnl|bosTau2|chr16 (40858989-40858291)
               

               
               368-1069, gnl|Hg17|chr18 (42649274-42645812)
               

               
               368-1069, gnl|Mm7|chr18 (77434469-77435158)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               368-1069, gnl|bosTau2|chr16 (40858989-40858291)
               

               
               368-1069, gnl|Hg17|chr18 (42649274-42645812)
               

               
               368-1069, gnl|Mm7|chr18 (77434469-77435158)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               spc (0.226732)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               spc (0.226732)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	368-1069, gnl\|bosTau2\|chr16 (40858989-40858291)
	368-1069, gnl\|Hg17\|chr18 (42649274-42645812)
	368-1069, gnl\|Mm7\|chr18 (77434469-77435158)

	vin (0.332557)
	spc (0.226732)
	sug (0.127291)
	thg (0.126791)
	cbl (0.114797)
	jca (0.11396)