Ss1.1-rcbl0_016460.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCCTTTGGAAACCATAAGTTTTTCAAAAGTCTGTGAGTCAGTATCTATTCTGCAAAGA AGTTCATTGTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCATTCGATGTTGGTGTC TCGATAAGTTCATCAAGGACTTTCTCCAGCCGGACAAGACTTTCTTAGATCAGACCAAGA AGGCCGTGGACATTATCTGTAAATTCCTTAAAGAAAATTGCTTCCGCCATTCAGCTACAA AGGTTCAGAAGATTGTCAAGGGGGGATCAACTGCCAAAGGCACAGCTCTGAAGAACTCCG ATGCTGACCTCGTCGTGTTCACAGACTTGCTGAAAAGCTACACCTCCCAAAAAAATGAGA GATGCACCATCATCAAGGAAATCCACAAGCAGCTGGAAGCCTGTCAGCAGGCGCAGGATT TTGAAGTGACGTTTGAGATCTCAAAATGGAAGGCTCCCAGGGTGCTGAGCTTCTCTCTGA AATCCAAAGTCCTCAACGAATGCGTACACTTCGATGTGCTGCCTGCCTTTAACGCACTAG GTAAGACCCCCAGCTGTGAGCTTCTGGAAGAGGAAGATGGATTCTGGTGCGACGGTGGAA GGAGTAGGGGGCAGGTCACGTGACGTACTAATGGGTCATGGGTCCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCCTTTGGAAACCATAAGTTTTTCAAAAGTCTGTGAGTCAGTATCTATTCTGCAAAGA AGTTCATTGTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCATTCGATGTTGGTGTC TCGATAAGTTCATCAAGGACTTTCTCCAGCCGGACAAGACTTTCTTAGATCAGACCAAGA AGGCCGTGGACATTATCTGTAAATTCCTTAAAGAAAATTGCTTCCGCCATTCAGCTACAA AGGTTCAGAAGATTGTCAAGGGGGGATCAACTGCCAAAGGCACAGCTCTGAAGAACTCCG ATGCTGACCTCGTCGTGTTCACAGACTTGCTGAAAAGCTACACCTCCCAAAAAAATGAGA GATGCACCATCATCAAGGAAATCCACAAGCAGCTGGAAGCCTGTCAGCAGGCGCAGGATT TTGAAGTGACGTTTGAGATCTCAAAATGGAAGGCTCCCAGGGTGCTGAGCTTCTCTCTGA AATCCAAAGTCCTCAACGAATGCGTACACTTCGATGTGCTGCCTGCCTTTAACGCACTAG GTAAGACCCCCAGCTGTGAGCTTCTGGAAGAGGAAGATGGATTCTGGTGCGACGGTGGAA GGAGTAGGGGGCAGGTCACGTGACGTACTAATGGGTCATGGGTCCAGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 409-528, - strand, RNAz p=0.632119 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 409-528, - strand, RNAz p=0.632119 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 120-247, gnl|bosTau2|chr17 (37683392-37683519) | |
| 120-247, gnl|canFam2|chr26 (13434946-13435166) | |
| 120-247, gnl|dasNov1|scaffold_29064 (5758-5952) | |
| 120-247, gnl|echTel1|scaffold_238391 (1815-2026) | |
| 120-247, gnl|hg17|chr12 (111864728-111864956) | |
| 120-247, gnl|Hg17|chr12 (111903490-111903617) | |
| 120-247, gnl|loxAfr1|scaffold_21226 (3326-3121) | |
| 120-247, gnl|mm7|chr5 (119994113-119993887) | |
| 120-247, gnl|Mm7|chr5 (119972796-119972666) | |
| 120-247, gnl|monDom2|scaffold_110 (1264095-1264290) | |
| 120-247, gnl|oryCun1|scaffold_135343 (4062-4302) | |
| 120-247, gnl|panTro1|chr10 (114571532-114571760) | |
| 120-247, gnl|rheMac2|chr11 (113894759-113894987) | |
| 120-247, gnl|rn3|chr12_random (904583-904786) | |
| 259-573, gnl|bosTau2|chr17 (37685032-37685350) | |
| 259-573, gnl|canFam2|chr26 (13460402-13460824) | |
| 259-573, gnl|canFam2|chr26 (13436440-13436793) | |
| 259-573, gnl|dasNov1|scaffold_28245 (9415-9020) | |
| 259-573, gnl|dasNov1|scaffold_29064 (7545-7862) | |
| 259-573, gnl|echTel1|scaffold_238391 (2953-3288) | |
| 259-573, gnl|echTel1|scaffold_318570 (5118-4730) | |
| 259-573, gnl|hg17|chr12 (111905423-111905830) | |
| 259-573, gnl|hg17|chr12 (111866234-111866588) | |
| 259-573, gnl|Hg17|chr12 (111905457-111905775) | |
| 259-573, gnl|loxAfr1|scaffold_21226 (2141-1793) | |
| 259-573, gnl|loxAfr1|scaffold_48333 (28323-27912) | |
| 259-573, gnl|mm7|chr5 (119972601-119972192) | |
| 259-573, gnl|mm7|chr5 (119993021-119992670) | |
| 259-573, gnl|Mm7|chr5 (119972565-119972249) | |
| 259-573, gnl|monDom2|scaffold_110 (1329806-1330222) | |
| 259-573, gnl|monDom2|scaffold_110 (1270056-1270371) | |
| 259-573, gnl|oryCun1|scaffold_135343 (5700-6116) | |
| 259-573, gnl|oryCun1|scaffold_135343 (5726-6053) | |
| 259-573, gnl|panTro1|chr10 (114613398-114613805) | |
| 259-573, gnl|panTro1|chr10 (114573038-114573392) | |
| 259-573, gnl|rheMac2|chr11 (113936133-113936565) | |
| 259-573, gnl|rheMac2|chr11 (113896258-113896612) | |
| 259-573, gnl|rn3|chr12_random (904836-905248) | |
| 259-573, gnl|rn3|chr12_random (904852-905171) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-247, gnl|bosTau2|chr17 (37683392-37683519) | |
| 120-247, gnl|canFam2|chr26 (13434946-13435166) | |
| 120-247, gnl|dasNov1|scaffold_29064 (5758-5952) | |
| 120-247, gnl|echTel1|scaffold_238391 (1815-2026) | |
| 120-247, gnl|hg17|chr12 (111864728-111864956) | |
| 120-247, gnl|Hg17|chr12 (111903490-111903617) | |
| 120-247, gnl|loxAfr1|scaffold_21226 (3326-3121) | |
| 120-247, gnl|mm7|chr5 (119994113-119993887) | |
| 120-247, gnl|Mm7|chr5 (119972796-119972666) | |
| 120-247, gnl|monDom2|scaffold_110 (1264095-1264290) | |
| 120-247, gnl|oryCun1|scaffold_135343 (4062-4302) | |
| 120-247, gnl|panTro1|chr10 (114571532-114571760) | |
| 120-247, gnl|rheMac2|chr11 (113894759-113894987) | |
| 120-247, gnl|rn3|chr12_random (904583-904786) | |
| 259-573, gnl|bosTau2|chr17 (37685032-37685350) | |
| 259-573, gnl|canFam2|chr26 (13460402-13460824) | |
| 259-573, gnl|canFam2|chr26 (13436440-13436793) | |
| 259-573, gnl|dasNov1|scaffold_28245 (9415-9020) | |
| 259-573, gnl|dasNov1|scaffold_29064 (7545-7862) | |
| 259-573, gnl|echTel1|scaffold_238391 (2953-3288) | |
| 259-573, gnl|echTel1|scaffold_318570 (5118-4730) | |
| 259-573, gnl|hg17|chr12 (111905423-111905830) | |
| 259-573, gnl|hg17|chr12 (111866234-111866588) | |
| 259-573, gnl|Hg17|chr12 (111905457-111905775) | |
| 259-573, gnl|loxAfr1|scaffold_21226 (2141-1793) | |
| 259-573, gnl|loxAfr1|scaffold_48333 (28323-27912) | |
| 259-573, gnl|mm7|chr5 (119972601-119972192) | |
| 259-573, gnl|mm7|chr5 (119993021-119992670) | |
| 259-573, gnl|Mm7|chr5 (119972565-119972249) | |
| 259-573, gnl|monDom2|scaffold_110 (1329806-1330222) | |
| 259-573, gnl|monDom2|scaffold_110 (1270056-1270371) | |
| 259-573, gnl|oryCun1|scaffold_135343 (5700-6116) | |
| 259-573, gnl|oryCun1|scaffold_135343 (5726-6053) | |
| 259-573, gnl|panTro1|chr10 (114613398-114613805) | |
| 259-573, gnl|panTro1|chr10 (114573038-114573392) | |
| 259-573, gnl|rheMac2|chr11 (113936133-113936565) | |
| 259-573, gnl|rheMac2|chr11 (113896258-113896612) | |
| 259-573, gnl|rn3|chr12_random (904836-905248) | |
| 259-573, gnl|rn3|chr12_random (904852-905171) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| cli (0.152812) |