Non-Coding RNA Search

Ss1.1-rcbl0_016468.5.5

Sequence:


               
               CGGAGATGTGTGGAGGTGTAGATAGATGTAGCTGTAATAGTTTAGTCCCAACACAGACTG
TGTGCATTACCATTATGCAACTACTATTTTGCTTTTCTGATGCTTTTTAAACCTTGCATA
GTATACTGGAATTAGCCCATCCAATCCATATAAAAATCTTTCTTGTGCATCTTTTCATCT
CCTTATGCTCTCACTCCCTCAGCTCACCCTGCATAGTTTATTTAATTTTTACCATTCATA
GAAAATCTGAATCAAATTTAGAAGCATAAAATTCAGGAAAACTGAGACTTTATCACCAAC
TCTCAGATTACTAGAAACTAGGTGTCAAAGTTTATCAAGGACACCAAGAGGTCCTCTTGG
CTTGAGCCTCACATCCAAAAACAGCCTCAAAAATAGCCTTTTGAAACTAAAAATAGAATC
ATCATATGACGCAGCAATTCTATTCCTGGGCATCTATCCAGAAAAGGCCATGACGCGAAA
AGATTTATGTATCCCAGTGTTCGTTGCAGCACTATATGCAATAGCCAAGACCTGGAAGCA
ACCCAGATGTCCATCAACAGAGGAGTGGATAAAGACATGATACATATACACAATGGAATA
TTACTGAGCCATAAAAATGAATGAAATAATGGTGTTTGCAGCAACAGGCATGGACCTAGA
AATTATCATGCTAAGTGTAGTCAGGCAGTGAGACACAAACAACATATGCTATCTCTTATA
TGTGGAATCTAATAAAAGGATATGATGAACTTATTTGCAGAACTGAAACTGACTTACAAA
CTTTGAAAAAATTATGGCTACCAAAGGAGACAGGTTGGAGGAGGGGAGGGATGGGCTGGC
AGCTTGGGATGGAAATGCTGTAAAATTAGGTTGTAATGATGGTTGTACAACTATAAGTGT
AATAAAATGCATTGAATTTAAAAATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGATGTGTGGAGGTGTAGATAGATGTAGCTGTAATAGTTTAGTCCCAACACAGACTG
TGTGCATTACCATTATGCAACTACTATTTTGCTTTTCTGATGCTTTTTAAACCTTGCATA
GTATACTGGAATTAGCCCATCCAATCCATATAAAAATCTTTCTTGTGCATCTTTTCATCT
CCTTATGCTCTCACTCCCTCAGCTCACCCTGCATAGTTTATTTAATTTTTACCATTCATA
GAAAATCTGAATCAAATTTAGAAGCATAAAATTCAGGAAAACTGAGACTTTATCACCAAC
TCTCAGATTACTAGAAACTAGGTGTCAAAGTTTATCAAGGACACCAAGAGGTCCTCTTGG
CTTGAGCCTCACATCCAAAAACAGCCTCAAAAATAGCCTTTTGAAACTAAAAATAGAATC
ATCATATGACGCAGCAATTCTATTCCTGGGCATCTATCCAGAAAAGGCCATGACGCGAAA
AGATTTATGTATCCCAGTGTTCGTTGCAGCACTATATGCAATAGCCAAGACCTGGAAGCA
ACCCAGATGTCCATCAACAGAGGAGTGGATAAAGACATGATACATATACACAATGGAATA
TTACTGAGCCATAAAAATGAATGAAATAATGGTGTTTGCAGCAACAGGCATGGACCTAGA
AATTATCATGCTAAGTGTAGTCAGGCAGTGAGACACAAACAACATATGCTATCTCTTATA
TGTGGAATCTAATAAAAGGATATGATGAACTTATTTGCAGAACTGAAACTGACTTACAAA
CTTTGAAAAAATTATGGCTACCAAAGGAGACAGGTTGGAGGAGGGGAGGGATGGGCTGGC
AGCTTGGGATGGAAATGCTGTAAAATTAGGTTGTAATGATGGTTGTACAACTATAAGTGT
AATAAAATGCATTGAATTTAAAAATAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               370-789, gnl|bosTau2|chr1 (72115139-72115557)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-789, gnl|bosTau2|chr1 (72115139-72115557)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cmu (0.55918)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	cmu (0.55918)
	ill (0.175593)
	mga (0.160205)
	tbr (0.154178)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	ret (0.128733)
	clu (0.119646)
	cbl (0.114797)