Non-Coding RNA Search

Ss1.1-rcbl0_016506.5

Sequence:


               
               CTCCCGCTTGCTCGCTTCTGCCCGACCGCCCCGCGCGCAACCTGCTACCTGCAGAGCCAA
GGTGCTCGGGTCCGGGGACTGAGTTCTCGGAGTTTTGCGGCAAAGTTCCGGCTGCTGTTT
GCGGAGATGCCTGGAAGGAGGTCTCGTAGGAACACTCAGACGAACCCTACGCGGGTGGCC
CTCCCGCCAGATCCTGAAGTCGAGTGTGCCATTCAGTTCAGAAGGATTGGAGACAAACTG
AACTTCCGGCAGAAACTTCTGAATCTGATAGCCAAACTCTTCCGCCTAGGAACCTGACTT
CAGAAGCTTGTGAATGAGGAGACTCCTTTAAAATGGAAGATTCCCCAGTAGGTGCAGATT
TCATCAGTTAGAGGAGAGAATGCCTTGTAATGGAGAAGAATGTGAAGGAGCTCTCACTTG
CTTTCGGATGCCCTAGGAATCGAAGACGGATAGGTCAAAAATGAGTTTCTGCTGAAGGTT
TTCCAGAAGTCGATGTTTCGGATGCAAGAACATTAAAAAATGACTTTGTTAATTTTGAAG
CAGGAATGGGAGAGTTATGAAAATAGGGGAGTTATTATTTATACATTTGGTTTTTGCTTT
AGAGTCTTGTTCTAGTCTTTTTGCTGAAGGTTGCTGCCCAGCTTGGTGTAAAAGGAGTTG
CCAAATGATTAGCTTATGGGCAAGGGTCAAGAAACAGAATATGTTCAATGTTTGTTTCTG
CTTTTGTATGGCAGCTCCAGAGCAATGTGTAGTATTTAGTTTATATATATTATCTTGTTA
AAAGTAAGGATTTTTTTCATGAGAACACTGAATGTCATAATGAATGTTGATTGCATAGGT
CACTACAAAATATAATTTGCTAGGTTTTTTTTTGACTCAAAATGTATTGTTTCTGTGCCG
ATGACCTTTTATTAAATGTGTTCTTATGGGAATTAACTAGGAAGTTATATATTTTGAAAA
AATTTGATAGAAGTGTTACTTGGTATCAGTAAAATTCTTTCAGTTTGAATATTAAAAAGA
TAAAGAGCATGGGGATTTTGTATAACCAAGAATAATGAAAAAAAGTGACAGTTTTTTTTA
TTGCTGTAATATAAACTTAGTAAAACAAATATTTATTAGTAAAATAAATATAACTTAGTA
AGAAAATGAATGTGTTTCTAAAGAAGTTTCTAAAATCTGTCGAGCATCCTTTCTCATACT
AGTTGGTATGCATTGTATAAGGGTGATCTTTCAAGAGAAATTAAGCATGTTTTCATAATT
GGGATATATATATGAACAGATGACTTGTCCAGAATGAAAATCTTTTAATGTCTAAAAATT
CCTATGATATCCATCCATCCATATATATACATATATATTAGAGTATACATTATGTGCTAT
GTATGTAGCATTACAGTAATCTGTACATTCTAAGTTTTATGAACTCTGTTTTTTTGTTAT
TATTAAAAGGCCAGGCTATCAACGAAGTCCCCAAACATATAAAAAAAGAATGTCATGATG
AAATTTCAATAGGAATAACTTTATTTATGTTACATATTTATAATTAAAATATTTTCTGTT
TAGTTTAAAAATGTGTATTTAGTTAAAGTTGAATTTTTGGCTTATGAGGCAAGGGCTTCA
TAACTACTTTAACTCTTACAATAAGAATGTTTTAATATAGGCTATAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCGCTTGCTCGCTTCTGCCCGACCGCCCCGCGCGCAACCTGCTACCTGCAGAGCCAA
GGTGCTCGGGTCCGGGGACTGAGTTCTCGGAGTTTTGCGGCAAAGTTCCGGCTGCTGTTT
GCGGAGATGCCTGGAAGGAGGTCTCGTAGGAACACTCAGACGAACCCTACGCGGGTGGCC
CTCCCGCCAGATCCTGAAGTCGAGTGTGCCATTCAGTTCAGAAGGATTGGAGACAAACTG
AACTTCCGGCAGAAACTTCTGAATCTGATAGCCAAACTCTTCCGCCTAGGAACCTGACTT
CAGAAGCTTGTGAATGAGGAGACTCCTTTAAAATGGAAGATTCCCCAGTAGGTGCAGATT
TCATCAGTTAGAGGAGAGAATGCCTTGTAATGGAGAAGAATGTGAAGGAGCTCTCACTTG
CTTTCGGATGCCCTAGGAATCGAAGACGGATAGGTCAAAAATGAGTTTCTGCTGAAGGTT
TTCCAGAAGTCGATGTTTCGGATGCAAGAACATTAAAAAATGACTTTGTTAATTTTGAAG
CAGGAATGGGAGAGTTATGAAAATAGGGGAGTTATTATTTATACATTTGGTTTTTGCTTT
AGAGTCTTGTTCTAGTCTTTTTGCTGAAGGTTGCTGCCCAGCTTGGTGTAAAAGGAGTTG
CCAAATGATTAGCTTATGGGCAAGGGTCAAGAAACAGAATATGTTCAATGTTTGTTTCTG
CTTTTGTATGGCAGCTCCAGAGCAATGTGTAGTATTTAGTTTATATATATTATCTTGTTA
AAAGTAAGGATTTTTTTCATGAGAACACTGAATGTCATAATGAATGTTGATTGCATAGGT
CACTACAAAATATAATTTGCTAGGTTTTTTTTTGACTCAAAATGTATTGTTTCTGTGCCG
ATGACCTTTTATTAAATGTGTTCTTATGGGAATTAACTAGGAAGTTATATATTTTGAAAA
AATTTGATAGAAGTGTTACTTGGTATCAGTAAAATTCTTTCAGTTTGAATATTAAAAAGA
TAAAGAGCATGGGGATTTTGTATAACCAAGAATAATGAAAAAAAGTGACAGTTTTTTTTA
TTGCTGTAATATAAACTTAGTAAAACAAATATTTATTAGTAAAATAAATATAACTTAGTA
AGAAAATGAATGTGTTTCTAAAGAAGTTTCTAAAATCTGTCGAGCATCCTTTCTCATACT
AGTTGGTATGCATTGTATAAGGGTGATCTTTCAAGAGAAATTAAGCATGTTTTCATAATT
GGGATATATATATGAACAGATGACTTGTCCAGAATGAAAATCTTTTAATGTCTAAAAATT
CCTATGATATCCATCCATCCATATATATACATATATATTAGAGTATACATTATGTGCTAT
GTATGTAGCATTACAGTAATCTGTACATTCTAAGTTTTATGAACTCTGTTTTTTTGTTAT
TATTAAAAGGCCAGGCTATCAACGAAGTCCCCAAACATATAAAAAAAGAATGTCATGATG
AAATTTCAATAGGAATAACTTTATTTATGTTACATATTTATAATTAAAATATTTTCTGTT
TAGTTTAAAAATGTGTATTTAGTTAAAGTTGAATTTTTGGCTTATGAGGCAAGGGCTTCA
TAACTACTTTAACTCTTACAATAAGAATGTTTTAATATAGGCTATAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|11276046|gb|AAG33869.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11276046|gb|AAG33869.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               188-305, - strand, RNAz p=0.908494
               

               
               1255-1368, - strand, RNAz p=0.563549

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-305, - strand, RNAz p=0.908494
               

               
               1255-1368, - strand, RNAz p=0.563549

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               188-1668, gnl|bosTau2|chr24 (43408842-43407394)
               

               
               188-1668, gnl|Hg17|chr18 (55720856-55722317)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-1668, gnl|bosTau2|chr24 (43408842-43407394)
               

               
               188-1668, gnl|Hg17|chr18 (55720856-55722317)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbl (0.573987)
               

               
               liv (0.438853)
               

               
               lin (0.291206)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               liv (0.438853)
               

               
               lin (0.291206)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	188-305, - strand, RNAz p=0.908494
	1255-1368, - strand, RNAz p=0.563549

	188-1668, gnl\|bosTau2\|chr24 (43408842-43407394)
	188-1668, gnl\|Hg17\|chr18 (55720856-55722317)

	cbl (0.573987)
	liv (0.438853)
	lin (0.291206)
	cki (0.165235)
	csp (0.161186)
	ski (0.146735)
	nca (0.136874)
	ste (0.135208)
	thg (0.126791)
	tra (0.123092)
	eep (0.122564)
	cty (0.10408)