Ss1.1-rcbl0_016562.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCCTGGCCGACGTGCCCGAACTGGCCCGACTTCTAGAGACGGACCCGTACCTGAAGC CCTACGCTCCGGACTTCCAGCGCAGGTATAAGCGTTTTAACCAGACTTTGACCAACTTTG GAGAGAACGAAGGTGGTATTGATAAGTTTTCCAGAGGTTATGAATCATTTGGCATCCACA GATGTGCTGATGGTGGTTTGTACTGCAAGGAATGGGCCCCAGGAGCAGAAGGAGTTTTTC TTACTGGAGACTTCAATGATTGGAATCCATTTTCATACCCATATAAAAAACTGGATTTTG GGAAATGGGAGCTGTATATCCCACCAAAGCAGAATAGATCTGTCCTAGTACCTCATGGAT CCAAATTAAAGATTGTTATTAGAAGTAAAAGTGGAGAGATCTTATATCGTATTTCACCGT GGGCAAAGTATGTGACTCGTGAAGGTGATAATGTGAATTATGATTGGACACACTGGGATC CAGAACACCCATATAAATTTAAGCATTCCAAACCAAAGAAGCCAAAAGGTCCAAGAATTT ATGAATCTCATGTGGGAATTTCTTCCTATGAAGGAAAAATAGCTTCATATAAACATTTTA CATGCAATGTACTACCAAGAATCAAAGACCTTGGATACAACTGCATTCAGTTGATGGCAA TCATGGAACATGCTTACTACGCCAGTTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTT CAAGCCGTTATGGAACTCCTGAAGAGCTGAAAGAATTGGTTGACACAGCTCACTCCATGG GTATTACAGTCCTCTTAGATTTGGTGCACAGTCATGCCTCAAAAAAATTCAGAAGATGGA TTGAATATGTTTGATGGGACAGAGTCCTGTTATTTTCATTATGGACCTCGAGGGAATCAT AATCTTTGGGACAGTCGATTGTTTGACTATTCCAGCTGGGAAGTTTTAAGATTTCTTCTA TCAAACATAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCCTGGCCGACGTGCCCGAACTGGCCCGACTTCTAGAGACGGACCCGTACCTGAAGC CCTACGCTCCGGACTTCCAGCGCAGGTATAAGCGTTTTAACCAGACTTTGACCAACTTTG GAGAGAACGAAGGTGGTATTGATAAGTTTTCCAGAGGTTATGAATCATTTGGCATCCACA GATGTGCTGATGGTGGTTTGTACTGCAAGGAATGGGCCCCAGGAGCAGAAGGAGTTTTTC TTACTGGAGACTTCAATGATTGGAATCCATTTTCATACCCATATAAAAAACTGGATTTTG GGAAATGGGAGCTGTATATCCCACCAAAGCAGAATAGATCTGTCCTAGTACCTCATGGAT CCAAATTAAAGATTGTTATTAGAAGTAAAAGTGGAGAGATCTTATATCGTATTTCACCGT GGGCAAAGTATGTGACTCGTGAAGGTGATAATGTGAATTATGATTGGACACACTGGGATC CAGAACACCCATATAAATTTAAGCATTCCAAACCAAAGAAGCCAAAAGGTCCAAGAATTT ATGAATCTCATGTGGGAATTTCTTCCTATGAAGGAAAAATAGCTTCATATAAACATTTTA CATGCAATGTACTACCAAGAATCAAAGACCTTGGATACAACTGCATTCAGTTGATGGCAA TCATGGAACATGCTTACTACGCCAGTTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTT CAAGCCGTTATGGAACTCCTGAAGAGCTGAAAGAATTGGTTGACACAGCTCACTCCATGG GTATTACAGTCCTCTTAGATTTGGTGCACAGTCATGCCTCAAAAAAATTCAGAAGATGGA TTGAATATGTTTGATGGGACAGAGTCCTGTTATTTTCATTATGGACCTCGAGGGAATCAT AATCTTTGGGACAGTCGATTGTTTGACTATTCCAGCTGGGAAGTTTTAAGATTTCTTCTA TCAAACATAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 517-634, - strand, RNAz p=0.854037 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 517-634, - strand, RNAz p=0.854037 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 84-255, gnl|bosTau2|chr1 (15947096-15946925) | |
| 84-255, gnl|Hg17|chr3 (81837456-81837285) | |
| 84-255, gnl|Mm7|chr16 (70353888-70354059) | |
| 498-634, gnl|bosTau2|chr1 (16044160-16044024) | |
| 498-634, gnl|canFam2|chr31 (8874369-8874215) | |
| 498-634, gnl|danRer3|chr15 (20277155-20277001) | |
| 498-634, gnl|echTel1|scaffold_181570 (3665-3819) | |
| 498-634, gnl|fr1|chrUn (54539605-54539451) | |
| 498-634, gnl|galGal2|chr1 (89059914-89059760) | |
| 498-634, gnl|hg17|chr3 (81780686-81780840) | |
| 498-634, gnl|Hg17|chr3 (81780832-81780696) | |
| 498-634, gnl|mm7|chr16 (70428151-70427997) | |
| 498-634, gnl|Mm7|chr16 (70428003-70428139) | |
| 498-634, gnl|monDom2|scaffold_25 (4230299-4230447) | |
| 498-634, gnl|oryCun1|scaffold_205263 (18988-19142) | |
| 498-634, gnl|panTro1|chr2 (84015255-84015409) | |
| 498-634, gnl|rheMac2|chr2 (5972241-5972395) | |
| 498-634, gnl|rn3|chr11 (8870262-8870108) | |
| 498-634, gnl|tetNig1|chr16 (6018291-6018437) | |
| 498-634, gnl|xenTro1|scaffold_179 (1708391-1708239) | |
| 709-952, gnl|bosTau2|chr1 (16037346-16037106) | |
| 709-952, gnl|Hg17|chr3 (81774845-81774605) | |
| 709-952, gnl|Mm7|chr16 (70434588-70434825) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-255, gnl|bosTau2|chr1 (15947096-15946925) | |
| 84-255, gnl|Hg17|chr3 (81837456-81837285) | |
| 84-255, gnl|Mm7|chr16 (70353888-70354059) | |
| 498-634, gnl|bosTau2|chr1 (16044160-16044024) | |
| 498-634, gnl|canFam2|chr31 (8874369-8874215) | |
| 498-634, gnl|danRer3|chr15 (20277155-20277001) | |
| 498-634, gnl|echTel1|scaffold_181570 (3665-3819) | |
| 498-634, gnl|fr1|chrUn (54539605-54539451) | |
| 498-634, gnl|galGal2|chr1 (89059914-89059760) | |
| 498-634, gnl|hg17|chr3 (81780686-81780840) | |
| 498-634, gnl|Hg17|chr3 (81780832-81780696) | |
| 498-634, gnl|mm7|chr16 (70428151-70427997) | |
| 498-634, gnl|Mm7|chr16 (70428003-70428139) | |
| 498-634, gnl|monDom2|scaffold_25 (4230299-4230447) | |
| 498-634, gnl|oryCun1|scaffold_205263 (18988-19142) | |
| 498-634, gnl|panTro1|chr2 (84015255-84015409) | |
| 498-634, gnl|rheMac2|chr2 (5972241-5972395) | |
| 498-634, gnl|rn3|chr11 (8870262-8870108) | |
| 498-634, gnl|tetNig1|chr16 (6018291-6018437) | |
| 498-634, gnl|xenTro1|scaffold_179 (1708391-1708239) | |
| 709-952, gnl|bosTau2|chr1 (16037346-16037106) | |
| 709-952, gnl|Hg17|chr3 (81774845-81774605) | |
| 709-952, gnl|Mm7|chr16 (70434588-70434825) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| mas (0.210305) | |
| pla (0.133672) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| mas (0.210305) | |
| pla (0.133672) | |
| jca (0.11396) |