Non-Coding RNA Search

Ss1.1-rcbl0_016696.5

Sequence:


               
               ATTAACACATTTTCAAGATGATTGACCCTGTCCTTACCTAATCCAATGAGTGTTACAGAG
AGCTTGCTGTGACGAGAAGTATAAATCTTAAAAGGGGATACATGATAATAGAGGGCTGAA
ATTTAAATCTGTATTTAAAAAAAAAAATCACCAAATCTATTTGAAAACAAGTCAATTCAT
GTTATGCTGAAATTTTGGGGGCTTTCAGATTTCTCCTTTTTAACCACATTTCTGAGTGAA
TAATAAAAATAAGTTTTTTTTTTTTCCACAGCCCTTGTACTCCAAATTTTTTTTTTTTTT
TTTTTAGTCCATCAGTATTAACTATTGGGATACTACTGGTTTTGTATTCTTTTTTTTTTG
AGACAGCAGTACATATAATAGAGGTACAGTGCGTTGGATTTTTGTTTATGTATTTATTTC
ATTCCAGTTTGATTTATTTTAATTGTCGATACTTGTCAAACAGTAAACATTACTTGTTTT
ATTTATGATATATTTCAGCTTAAAGTTATGTTATTATATGTGGATGTAAATATAGATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAACACATTTTCAAGATGATTGACCCTGTCCTTACCTAATCCAATGAGTGTTACAGAG
AGCTTGCTGTGACGAGAAGTATAAATCTTAAAAGGGGATACATGATAATAGAGGGCTGAA
ATTTAAATCTGTATTTAAAAAAAAAAATCACCAAATCTATTTGAAAACAAGTCAATTCAT
GTTATGCTGAAATTTTGGGGGCTTTCAGATTTCTCCTTTTTAACCACATTTCTGAGTGAA
TAATAAAAATAAGTTTTTTTTTTTTCCACAGCCCTTGTACTCCAAATTTTTTTTTTTTTT
TTTTTAGTCCATCAGTATTAACTATTGGGATACTACTGGTTTTGTATTCTTTTTTTTTTG
AGACAGCAGTACATATAATAGAGGTACAGTGCGTTGGATTTTTGTTTATGTATTTATTTC
ATTCCAGTTTGATTTATTTTAATTGTCGATACTTGTCAAACAGTAAACATTACTTGTTTT
ATTTATGATATATTTCAGCTTAAAGTTATGTTATTATATGTGGATGTAAATATAGATTTG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-540, gnl|bosTau2|chr13 (62183797-62183247)
               

               
               1-540, gnl|canFam2|chr24 (42392378-42393044)
               

               
               1-540, gnl|dasNov1|scaffold_74469 (1182-1827)
               

               
               1-540, gnl|echTel1|scaffold_114979 (1287-662)
               

               
               1-540, gnl|galGal2|chr20 (12082932-12082286)
               

               
               1-540, gnl|hg17|chr20 (51617000-51617649)
               

               
               1-540, gnl|Hg17|chr20 (51617560-51617028)
               

               
               1-540, gnl|loxAfr1|scaffold_13305 (47849-48504)
               

               
               1-540, gnl|mm7|chr2 (169901281-169901926)
               

               
               1-540, gnl|Mm7|chr2 (169901840-169901310)
               

               
               1-540, gnl|monDom2|scaffold_1 (165783128-165783758)
               

               
               1-540, gnl|oryCun1|scaffold_178763 (1387-753)
               

               
               1-540, gnl|panTro1|chr21 (54393980-54394628)
               

               
               1-540, gnl|rheMac2|chr10 (10906371-10905722)
               

               
               1-540, gnl|rn3|chr3 (161054680-161055306)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr13 (62183797-62183247)
               

               
               1-540, gnl|canFam2|chr24 (42392378-42393044)
               

               
               1-540, gnl|dasNov1|scaffold_74469 (1182-1827)
               

               
               1-540, gnl|echTel1|scaffold_114979 (1287-662)
               

               
               1-540, gnl|galGal2|chr20 (12082932-12082286)
               

               
               1-540, gnl|hg17|chr20 (51617000-51617649)
               

               
               1-540, gnl|Hg17|chr20 (51617560-51617028)
               

               
               1-540, gnl|loxAfr1|scaffold_13305 (47849-48504)
               

               
               1-540, gnl|mm7|chr2 (169901281-169901926)
               

               
               1-540, gnl|Mm7|chr2 (169901840-169901310)
               

               
               1-540, gnl|monDom2|scaffold_1 (165783128-165783758)
               

               
               1-540, gnl|oryCun1|scaffold_178763 (1387-753)
               

               
               1-540, gnl|panTro1|chr21 (54393980-54394628)
               

               
               1-540, gnl|rheMac2|chr10 (10906371-10905722)
               

               
               1-540, gnl|rn3|chr3 (161054680-161055306)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nmm (0.132802)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               cbl (0.114797)

	1-540, gnl\|bosTau2\|chr13 (62183797-62183247)
	1-540, gnl\|canFam2\|chr24 (42392378-42393044)
	1-540, gnl\|dasNov1\|scaffold_74469 (1182-1827)
	1-540, gnl\|echTel1\|scaffold_114979 (1287-662)
	1-540, gnl\|galGal2\|chr20 (12082932-12082286)
	1-540, gnl\|hg17\|chr20 (51617000-51617649)
	1-540, gnl\|Hg17\|chr20 (51617560-51617028)
	1-540, gnl\|loxAfr1\|scaffold_13305 (47849-48504)
	1-540, gnl\|mm7\|chr2 (169901281-169901926)
	1-540, gnl\|Mm7\|chr2 (169901840-169901310)
	1-540, gnl\|monDom2\|scaffold_1 (165783128-165783758)
	1-540, gnl\|oryCun1\|scaffold_178763 (1387-753)
	1-540, gnl\|panTro1\|chr21 (54393980-54394628)
	1-540, gnl\|rheMac2\|chr10 (10906371-10905722)
	1-540, gnl\|rn3\|chr3 (161054680-161055306)