Ss1.1-rcbl0_017315.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGAATTTGCTTGCTAGAAAACAAAATGCAAGGCTCGACAAACAGAACGACTTGGGATG GAAGTTATTTGGAAAAGTACCACTCCGAGAGAATGCTCAGAAAGATTCGAAGAAAATGCA AAAGGAATGTGAAGACAAGGCTGGACGACCTAGCAGGCCACCCTCTCCAAAGCAGAATGT GAGGAAGAATCTTGATTTTGAGCCACTTTCCACCACTGCCCTCATCCTGGAAGACAGACC AGCAAACCTCCCAGCGAAGCCAGCTGAAGAAGCTCAGAAACACAGGCAACAGTATGAAGA AATGGTGGTTCAAGCCAAAAAACGAGAGCTGAAAGAAGCCCAGAGGAGGAAAAAACAGCT GGAAGAAAGATGCAAATTAGAAGAAAGTATTGGAAATGCGGTCCTTACTTGGAACAATGA GATTCTGCCCAACTGGGAGACCATGTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCA GGGCATCCCTCCCAGCGTGAGAGGCAAAGTCTGGAGCTTAGCCATCGGCAACGAGCTGAA CATCACCCACGAGCTTTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCTT CAGCACAGGAGGCTCCGAAGTGGAGAGTGAAGCAGCAGACAGAGAAGCCAGCCTGGAGCT TATTAAACTGGACATTTCCAGAACGTTTCCTAATCTCTGCATTTTCCAGCAGGGTGGTCG TACCATGGACACGTTGCACAGCATCTGGGCGCTTACACTTGTTACCGGCCGGATGTGGGG TACGTTCAGGGCATGTCCTTCATAGCGGCAGTGTTGATCTGAACTTGGACACTGCAGATG CCTTCATTGCTTTCTCTAATCTTTTGAATAAACCCTGTCAATGGCGTTTTCCGAGTGGAC CATGGCTTATGTTGACTTATTTTGCTGCATTTGAGGTNTCTTTGAAGAAAATTTGCCGAA ATATTTGCTCACTTCAGAAAAACA------------------------TGATGGNTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGAATTTGCTTGCTAGAAAACAAAATGCAAGGCTCGACAAACAGAACGACTTGGGATG GAAGTTATTTGGAAAAGTACCACTCCGAGAGAATGCTCAGAAAGATTCGAAGAAAATGCA AAAGGAATGTGAAGACAAGGCTGGACGACCTAGCAGGCCACCCTCTCCAAAGCAGAATGT GAGGAAGAATCTTGATTTTGAGCCACTTTCCACCACTGCCCTCATCCTGGAAGACAGACC AGCAAACCTCCCAGCGAAGCCAGCTGAAGAAGCTCAGAAACACAGGCAACAGTATGAAGA AATGGTGGTTCAAGCCAAAAAACGAGAGCTGAAAGAAGCCCAGAGGAGGAAAAAACAGCT GGAAGAAAGATGCAAATTAGAAGAAAGTATTGGAAATGCGGTCCTTACTTGGAACAATGA GATTCTGCCCAACTGGGAGACCATGTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCA GGGCATCCCTCCCAGCGTGAGAGGCAAAGTCTGGAGCTTAGCCATCGGCAACGAGCTGAA CATCACCCACGAGCTTTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCTT CAGCACAGGAGGCTCCGAAGTGGAGAGTGAAGCAGCAGACAGAGAAGCCAGCCTGGAGCT TATTAAACTGGACATTTCCAGAACGTTTCCTAATCTCTGCATTTTCCAGCAGGGTGGTCG TACCATGGACACGTTGCACAGCATCTGGGCGCTTACACTTGTTACCGGCCGGATGTGGGG TACGTTCAGGGCATGTCCTTCATAGCGGCAGTGTTGATCTGAACTTGGACACTGCAGATG CCTTCATTGCTTTCTCTAATCTTTTGAATAAACCCTGTCAATGGCGTTTTCCGAGTGGAC CATGGCTTATGTTGACTTATTTTGCTGCATTTGAGGTNTCTTTGAAGAAAATTTGCCGAA ATATTTGCTCACTTCAGAAAAACA------------------------TGATGGNTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 325-443, + strand, RNAz p=0.512172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 325-443, + strand, RNAz p=0.512172 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 123-243, gnl|bosTau2|chr6 (69082839-69082959) | |
| 123-243, gnl|Hg17|chr4 (7113981-7114101) | |
| 123-243, gnl|Mm7|chr5 (35587876-35587756) | |
| 325-446, gnl|bosTau2|chr6 (69086250-69086371) | |
| 325-446, gnl|canFam2|chr3 (61890206-61890354) | |
| 325-446, gnl|danRer3|chr7 (34437089-34436948) | |
| 325-446, gnl|dasNov1|scaffold_12453 (8862-8712) | |
| 325-446, gnl|echTel1|scaffold_259466 (510-645) | |
| 325-446, gnl|fr1|chrUn (298483763-298483904) | |
| 325-446, gnl|galGal2|chr4 (80218786-80218911) | |
| 325-446, gnl|hg17|chr4 (7118860-7119008) | |
| 325-446, gnl|Hg17|chr4 (7118882-7119003) | |
| 325-446, gnl|loxAfr1|scaffold_56218 (317-441) | |
| 325-446, gnl|mm7|chr5 (35583214-35583066) | |
| 325-446, gnl|Mm7|chr5 (35583190-35583069) | |
| 325-446, gnl|monDom2|scaffold_10 (34991289-34991434) | |
| 325-446, gnl|panTro1|chr3 (7184696-7184844) | |
| 325-446, gnl|rheMac2|chr5 (1803785-1803637) | |
| 325-446, gnl|rn3|chr14 (79828817-79828965) | |
| 325-446, gnl|tetNig1|chrUn_random (139757887-139758009) | |
| 784-906, gnl|bosTau2|chr6 (69096050-69096175) | |
| 784-906, gnl|canFam2|chr3 (61901439-61901609) | |
| 784-906, gnl|danRer3|chr7 (34432314-34432128) | |
| 784-906, gnl|dasNov1|scaffold_233093 (3460-3289) | |
| 784-906, gnl|echTel1|scaffold_254234 (5308-5465) | |
| 784-906, gnl|fr1|chrUn (298484708-298484851) | |
| 784-906, gnl|galGal2|chr4 (80225555-80225705) | |
| 784-906, gnl|hg17|chr4 (7130419-7130589) | |
| 784-906, gnl|Hg17|chr4 (7130452-7130577) | |
| 784-906, gnl|loxAfr1|scaffold_45460 (30080-30227) | |
| 784-906, gnl|mm7|chr5 (35570368-35570199) | |
| 784-906, gnl|Mm7|chr5 (35570334-35570209) | |
| 784-906, gnl|monDom2|scaffold_10 (35004035-35004195) | |
| 784-906, gnl|oryCun1|scaffold_102972 (10888-11024) | |
| 784-906, gnl|panTro1|chr3 (7196301-7196471) | |
| 784-906, gnl|rheMac2|chr5 (1792397-1792231) | |
| 784-906, gnl|rn3|chr14 (79842993-79843162) | |
| 784-906, gnl|tetNig1|chrUn_random (139758829-139758975) | |
| 784-906, gnl|xenTro1|scaffold_119 (2008201-2008030) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-243, gnl|bosTau2|chr6 (69082839-69082959) | |
| 123-243, gnl|Hg17|chr4 (7113981-7114101) | |
| 123-243, gnl|Mm7|chr5 (35587876-35587756) | |
| 325-446, gnl|bosTau2|chr6 (69086250-69086371) | |
| 325-446, gnl|canFam2|chr3 (61890206-61890354) | |
| 325-446, gnl|danRer3|chr7 (34437089-34436948) | |
| 325-446, gnl|dasNov1|scaffold_12453 (8862-8712) | |
| 325-446, gnl|echTel1|scaffold_259466 (510-645) | |
| 325-446, gnl|fr1|chrUn (298483763-298483904) | |
| 325-446, gnl|galGal2|chr4 (80218786-80218911) | |
| 325-446, gnl|hg17|chr4 (7118860-7119008) | |
| 325-446, gnl|Hg17|chr4 (7118882-7119003) | |
| 325-446, gnl|loxAfr1|scaffold_56218 (317-441) | |
| 325-446, gnl|mm7|chr5 (35583214-35583066) | |
| 325-446, gnl|Mm7|chr5 (35583190-35583069) | |
| 325-446, gnl|monDom2|scaffold_10 (34991289-34991434) | |
| 325-446, gnl|panTro1|chr3 (7184696-7184844) | |
| 325-446, gnl|rheMac2|chr5 (1803785-1803637) | |
| 325-446, gnl|rn3|chr14 (79828817-79828965) | |
| 325-446, gnl|tetNig1|chrUn_random (139757887-139758009) | |
| 784-906, gnl|bosTau2|chr6 (69096050-69096175) | |
| 784-906, gnl|canFam2|chr3 (61901439-61901609) | |
| 784-906, gnl|danRer3|chr7 (34432314-34432128) | |
| 784-906, gnl|dasNov1|scaffold_233093 (3460-3289) | |
| 784-906, gnl|echTel1|scaffold_254234 (5308-5465) | |
| 784-906, gnl|fr1|chrUn (298484708-298484851) | |
| 784-906, gnl|galGal2|chr4 (80225555-80225705) | |
| 784-906, gnl|hg17|chr4 (7130419-7130589) | |
| 784-906, gnl|Hg17|chr4 (7130452-7130577) | |
| 784-906, gnl|loxAfr1|scaffold_45460 (30080-30227) | |
| 784-906, gnl|mm7|chr5 (35570368-35570199) | |
| 784-906, gnl|Mm7|chr5 (35570334-35570209) | |
| 784-906, gnl|monDom2|scaffold_10 (35004035-35004195) | |
| 784-906, gnl|oryCun1|scaffold_102972 (10888-11024) | |
| 784-906, gnl|panTro1|chr3 (7196301-7196471) | |
| 784-906, gnl|rheMac2|chr5 (1792397-1792231) | |
| 784-906, gnl|rn3|chr14 (79842993-79843162) | |
| 784-906, gnl|tetNig1|chrUn_random (139758829-139758975) | |
| 784-906, gnl|xenTro1|scaffold_119 (2008201-2008030) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |