Non-Coding RNA Search

Ss1.1-rcbl0_017439.5

Sequence:


               
               CTCGGCCGCGGGCCGAAACCTGTGGACCCGGGCGGCGGATTTGGAGTTTAACGGGATAGC
AGTGAGCATTTTCTGGGTGCGATAGGATTCCCTGCCATGTGTGCCTTTTTTTCACCCCTG
CTTAGACATAGATATACGTATGTAATGTATAAATACACACACGCAAATAATACATAATAA
ACACTTATTCCGGGCCCGCCCTTGTCGGGTGGAGAGAAGGCCGAGGTGTCTGGTGAGAGG
GTTTCCTTTCTTGGTCGCCCGCCTTCTCTCTCCCTTGCCCCCCAGTCGAAGGGTGGTAAT
GAACGCTTTTGACGTGGGAAACTGTGAGATTGGTATTTGTAAACATACAGCACTCGCGGA
GTGTATTGTACGCCTCCGCGAGAGGTTTCAGGTCCTTTTGGTATCGTGATTGCAAAAGAA
TGAGATATTTAGACCTGAAAGAAGCACAGCATCGGGATTTCTAGCCGTACCTGAATGGGA
TGAATTACTGCTATTTTAACAACGTTGATTAAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCCGCGGGCCGAAACCTGTGGACCCGGGCGGCGGATTTGGAGTTTAACGGGATAGC
AGTGAGCATTTTCTGGGTGCGATAGGATTCCCTGCCATGTGTGCCTTTTTTTCACCCCTG
CTTAGACATAGATATACGTATGTAATGTATAAATACACACACGCAAATAATACATAATAA
ACACTTATTCCGGGCCCGCCCTTGTCGGGTGGAGAGAAGGCCGAGGTGTCTGGTGAGAGG
GTTTCCTTTCTTGGTCGCCCGCCTTCTCTCTCCCTTGCCCCCCAGTCGAAGGGTGGTAAT
GAACGCTTTTGACGTGGGAAACTGTGAGATTGGTATTTGTAAACATACAGCACTCGCGGA
GTGTATTGTACGCCTCCGCGAGAGGTTTCAGGTCCTTTTGGTATCGTGATTGCAAAAGAA
TGAGATATTTAGACCTGAAAGAAGCACAGCATCGGGATTTCTAGCCGTACCTGAATGGGA
TGAATTACTGCTATTTTAACAACGTTGATTAAACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-227, - strand, RNAz p=0.53465

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-227, - strand, RNAz p=0.53465

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-513, gnl|bosTau2|chr3 (62906282-62906789)
               

               
               1-513, gnl|Hg17|chr1 (52730334-52729825)
               

               
               1-513, gnl|Mm7|chr4 (107836923-107837423)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-513, gnl|bosTau2|chr3 (62906282-62906789)
               

               
               1-513, gnl|Hg17|chr1 (52730334-52729825)
               

               
               1-513, gnl|Mm7|chr4 (107836923-107837423)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	1-513, gnl\|bosTau2\|chr3 (62906282-62906789)
	1-513, gnl\|Hg17\|chr1 (52730334-52729825)
	1-513, gnl\|Mm7\|chr4 (107836923-107837423)