Non-Coding RNA Search

Ss1.1-rcbl0_017707.5

Sequence:


               
               TATTGTTTTAACCCATTCTTCATTATAAAGTTCATTTTTATTGAATGATTATTGTGTACC
AAGCATCATGGCTAAATATATACATTATGGTGACTCTTCTATTGTTTTTAATTAAAACAC
AATAATCCATTGAGAAACTGCAACATTCCAGCTGTTGTAACTTTTTAAAATCATATGGTC
ATGACTTTATATCCTTTTTCTCTCCTATTCATAATAATTTCCTGATTAAATTTTGTCATA
TTTTCCATATTACTCACTTATGCCATGAGTATAATCCTGCATAATCCCTTGACATCTAAG
CCAGAAACACTCTTTCAGGAGTGCAAAATTATATTATTAAGCATTTAACTATGTAGCTTG
CAAAAGATGGAAACTTCTAGTTACAGATGTTCTGACTTTGATGAAGATATTTAGCCATCA
ATGTGACAGTTACTTAAAAAATATTCTTTGTTGGAAGAAAAAAGTTCATAATAATAACTT
TGTCATCTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGTTTTAACCCATTCTTCATTATAAAGTTCATTTTTATTGAATGATTATTGTGTACC
AAGCATCATGGCTAAATATATACATTATGGTGACTCTTCTATTGTTTTTAATTAAAACAC
AATAATCCATTGAGAAACTGCAACATTCCAGCTGTTGTAACTTTTTAAAATCATATGGTC
ATGACTTTATATCCTTTTTCTCTCCTATTCATAATAATTTCCTGATTAAATTTTGTCATA
TTTTCCATATTACTCACTTATGCCATGAGTATAATCCTGCATAATCCCTTGACATCTAAG
CCAGAAACACTCTTTCAGGAGTGCAAAATTATATTATTAAGCATTTAACTATGTAGCTTG
CAAAAGATGGAAACTTCTAGTTACAGATGTTCTGACTTTGATGAAGATATTTAGCCATCA
ATGTGACAGTTACTTAAAAAATATTCTTTGTTGGAAGAAAAAAGTTCATAATAATAACTT
TGTCATCTTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-406, + strand, RNAz p=0.80055

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-406, + strand, RNAz p=0.80055

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-492, gnl|bosTau2|chr26 (7288347-7287872)
               

               
               1-492, gnl|Hg17|chr10 (91168454-91168937)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr26 (7288347-7287872)
               

               
               1-492, gnl|Hg17|chr10 (91168454-91168937)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.292569)
               

               
               eye (0.170503)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               eye (0.170503)
               

               
               cbl (0.114797)

	1-492, gnl\|bosTau2\|chr26 (7288347-7287872)
	1-492, gnl\|Hg17\|chr10 (91168454-91168937)