Non-Coding RNA Search

Ss1.1-rcbl0_018736.5

Sequence:


               
               GTTTGACCTTTCTGTGAGCATTTGCTGCTTTTGCAATGGTATCATGCAGAGCCTATGAAA
TTGCTTTTATGACAGACATCTTTGTATTCCACCTGCCTTTTTTTTATTTTCCATTTGCAG
TCTGTTCAGTTCAGGAAGCTGCTATAACACTTGGTGCCAGTGTTCCCAAACTCTAAGCAG
TGTGTTTTCCATTTGCACTAACCATCAGGAAACTAGAATTTCTGGTTTCCTCAGGTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGACCTTTCTGTGAGCATTTGCTGCTTTTGCAATGGTATCATGCAGAGCCTATGAAA
TTGCTTTTATGACAGACATCTTTGTATTCCACCTGCCTTTTTTTTATTTTCCATTTGCAG
TCTGTTCAGTTCAGGAAGCTGCTATAACACTTGGTGCCAGTGTTCCCAAACTCTAAGCAG
TGTGTTTTCCATTTGCACTAACCATCAGGAAACTAGAATTTCTGGTTTCCTCAGGTATGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-240, + strand, RNAz p=0.769828
               

               
               147-240, - strand, RNAz p=0.99465

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.769828
               

               
               147-240, - strand, RNAz p=0.99465

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-240, gnl|bosTau2|chr1 (449234-449013)
               

               
               1-240, gnl|canFam2|chr31 (30442494-30443053)
               

               
               1-240, gnl|dasNov1|scaffold_728 (39709-40240)
               

               
               1-240, gnl|echTel1|scaffold_285522 (54277-54750)
               

               
               1-240, gnl|hg17|chr21 (33050030-33050573)
               

               
               1-240, gnl|Hg17|chr21 (33050668-33050431)
               

               
               1-240, gnl|loxAfr1|scaffold_4870 (438-968)
               

               
               1-240, gnl|mm7|chr16 (91080997-91081512)
               

               
               1-240, gnl|Mm7|chr16 (91081601-91081380)
               

               
               1-240, gnl|monDom2|scaffold_29 (15293805-15293224)
               

               
               1-240, gnl|oryCun1|scaffold_212060 (39666-40195)
               

               
               1-240, gnl|panTro1|chr22 (33012628-33013172)
               

               
               1-240, gnl|rheMac2|chr3 (13772365-13771821)
               

               
               1-240, gnl|rn3|chr11 (31017493-31018015)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr1 (449234-449013)
               

               
               1-240, gnl|canFam2|chr31 (30442494-30443053)
               

               
               1-240, gnl|dasNov1|scaffold_728 (39709-40240)
               

               
               1-240, gnl|echTel1|scaffold_285522 (54277-54750)
               

               
               1-240, gnl|hg17|chr21 (33050030-33050573)
               

               
               1-240, gnl|Hg17|chr21 (33050668-33050431)
               

               
               1-240, gnl|loxAfr1|scaffold_4870 (438-968)
               

               
               1-240, gnl|mm7|chr16 (91080997-91081512)
               

               
               1-240, gnl|Mm7|chr16 (91081601-91081380)
               

               
               1-240, gnl|monDom2|scaffold_29 (15293805-15293224)
               

               
               1-240, gnl|oryCun1|scaffold_212060 (39666-40195)
               

               
               1-240, gnl|panTro1|chr22 (33012628-33013172)
               

               
               1-240, gnl|rheMac2|chr3 (13772365-13771821)
               

               
               1-240, gnl|rn3|chr11 (31017493-31018015)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	121-240, + strand, RNAz p=0.769828
	147-240, - strand, RNAz p=0.99465

	1-240, gnl\|bosTau2\|chr1 (449234-449013)
	1-240, gnl\|canFam2\|chr31 (30442494-30443053)
	1-240, gnl\|dasNov1\|scaffold_728 (39709-40240)
	1-240, gnl\|echTel1\|scaffold_285522 (54277-54750)
	1-240, gnl\|hg17\|chr21 (33050030-33050573)
	1-240, gnl\|Hg17\|chr21 (33050668-33050431)
	1-240, gnl\|loxAfr1\|scaffold_4870 (438-968)
	1-240, gnl\|mm7\|chr16 (91080997-91081512)
	1-240, gnl\|Mm7\|chr16 (91081601-91081380)
	1-240, gnl\|monDom2\|scaffold_29 (15293805-15293224)
	1-240, gnl\|oryCun1\|scaffold_212060 (39666-40195)
	1-240, gnl\|panTro1\|chr22 (33012628-33013172)
	1-240, gnl\|rheMac2\|chr3 (13772365-13771821)
	1-240, gnl\|rn3\|chr11 (31017493-31018015)