Non-Coding RNA Search

Ss1.1-rcbl0_019143.5

Sequence:


               
               GTCAAAGCTGGGAGTAGGCAGTGTTACTGGCATCTGATAGACAGAGGCCAGAGATGCTGC
TGAATGTTCTAGGATGTGCACAGGACAGCGCCTCTGCAACACAGAGTTACAGCCTAAAAT
ATCCGTGGCACTGAGGTTGAGGAACTGCCTTCAGAGGCTAGGACACAATTGGACTGGTGG
GGAGCCCATGTCTGTGGAGTGTGTGGTCCACCTTGTAGAGGAGTGACTCAAATTTGATGT
CTTGCTTTTGGATCTGTAGTGAGACAATTCCAGGGTCACCTCCTCAGGAAGCCCTCTGAA
CGCCTTCACTTTCCATACCTGAGTCTGAGCATCTTTTCTGACTCCCTAGCACCCAGAGCC
ACCATCAGAACGTGCTTCTTCCCCCTGAAACCTAAGCTCCCTAAGGCCAATTATATATAT
AATTGTAGTAAAATGTCTGCTACATGGTAATGATTAATAAATATTCGTTGAAAATGAATG
ACCCATCCTCATACATGAATAATAATGCTAGCTTACATTTTGATGGTGCTTTATAATTTT
TAAATTCCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAAAGCTGGGAGTAGGCAGTGTTACTGGCATCTGATAGACAGAGGCCAGAGATGCTGC
TGAATGTTCTAGGATGTGCACAGGACAGCGCCTCTGCAACACAGAGTTACAGCCTAAAAT
ATCCGTGGCACTGAGGTTGAGGAACTGCCTTCAGAGGCTAGGACACAATTGGACTGGTGG
GGAGCCCATGTCTGTGGAGTGTGTGGTCCACCTTGTAGAGGAGTGACTCAAATTTGATGT
CTTGCTTTTGGATCTGTAGTGAGACAATTCCAGGGTCACCTCCTCAGGAAGCCCTCTGAA
CGCCTTCACTTTCCATACCTGAGTCTGAGCATCTTTTCTGACTCCCTAGCACCCAGAGCC
ACCATCAGAACGTGCTTCTTCCCCCTGAAACCTAAGCTCCCTAAGGCCAATTATATATAT
AATTGTAGTAAAATGTCTGCTACATGGTAATGATTAATAAATATTCGTTGAAAATGAATG
ACCCATCCTCATACATGAATAATAATGCTAGCTTACATTTTGATGGTGCTTTATAATTTT
TAAATTCCATCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               6-272, + strand, RNAz p=0.942798

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-272, + strand, RNAz p=0.942798

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               15-74, + strand, RNAmicro p=0.94603

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               15-74, + strand, RNAmicro p=0.94603

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_021133, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021133, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               6-533, gnl|bosTau2|chr16 (46136255-46135697)
               

               
               6-533, gnl|Hg17|chr1 (179275467-179274895)
               

               
               6-533, gnl|Mm7|chr1 (153723948-153724513)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-533, gnl|bosTau2|chr16 (46136255-46135697)
               

               
               6-533, gnl|Hg17|chr1 (179275467-179274895)
               

               
               6-533, gnl|Mm7|chr1 (153723948-153724513)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	6-533, gnl\|bosTau2\|chr16 (46136255-46135697)
	6-533, gnl\|Hg17\|chr1 (179275467-179274895)
	6-533, gnl\|Mm7\|chr1 (153723948-153724513)