Non-Coding RNA Search

Ss1.1-rcbl0_019296.5

Sequence:


               
               GCATTTTGAAAGAATGACTTAAGAGTTAGTTAGGACAGAGCCACACTAACTTGTTTAATT
ATCATCTGGTTGTTATGGTGCTACAGTGTCCGAATTAAGTAGTTGGAAAGACACCGGTTG
GCTGCAGAGCCTAAAATATTTATTGTCTCGGCCATTTACAGAAAACATATGCCAGCCTCT
AACGCTGATGATTGAGTCTGAGTACTTAATTTGATAAAATATTGTTTTCAATAGTAGCCA
AAAGTGGTTAGCCTTTTCGACACATTTAATTCTGTAAACTGTGCTAATAATATTTTCTTC
AGTTGCTTTTTGTCACATTTATAATCTTGTTCTTTAATGGTTTTTTGGTTGTTTTTTCCC
TTTCATGTGTTGTCTAATTTGGTAAATGATGTTTCATTAATCTGTGTAGAGTTTTGTTAC
CACATTGATCGATTGTAAATATATATAAAAATCATCCTTATTGGTGAAAAATCAAAGAAT
TTTCTTGGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTTTGAAAGAATGACTTAAGAGTTAGTTAGGACAGAGCCACACTAACTTGTTTAATT
ATCATCTGGTTGTTATGGTGCTACAGTGTCCGAATTAAGTAGTTGGAAAGACACCGGTTG
GCTGCAGAGCCTAAAATATTTATTGTCTCGGCCATTTACAGAAAACATATGCCAGCCTCT
AACGCTGATGATTGAGTCTGAGTACTTAATTTGATAAAATATTGTTTTCAATAGTAGCCA
AAAGTGGTTAGCCTTTTCGACACATTTAATTCTGTAAACTGTGCTAATAATATTTTCTTC
AGTTGCTTTTTGTCACATTTATAATCTTGTTCTTTAATGGTTTTTTGGTTGTTTTTTCCC
TTTCATGTGTTGTCTAATTTGGTAAATGATGTTTCATTAATCTGTGTAGAGTTTTGTTAC
CACATTGATCGATTGTAAATATATATAAAAATCATCCTTATTGGTGAAAAATCAAAGAAT
TTTCTTGGTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-194, - strand, RNAz p=0.971547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-194, - strand, RNAz p=0.971547

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-492, gnl|bosTau2|chr16 (23579673-23579188)
               

               
               2-492, gnl|canFam2|chr7 (37250189-37250574)
               

               
               2-492, gnl|dasNov1|scaffold_22968 (11569-11952)
               

               
               2-492, gnl|hg17|chr1 (239630190-239630578)
               

               
               2-492, gnl|Hg17|chr1 (239630916-239630271)
               

               
               2-492, gnl|loxAfr1|scaffold_11171 (22156-22553)
               

               
               2-492, gnl|mm7|chr1 (176707092-176707480)
               

               
               2-492, gnl|Mm7|chr1 (176707655-176707165)
               

               
               2-492, gnl|monDom2|scaffold_13 (40770642-40770263)
               

               
               2-492, gnl|oryCun1|scaffold_85787 (3303-2926)
               

               
               2-492, gnl|panTro1|chr1 (223620726-223621114)
               

               
               2-492, gnl|rheMac2|chr1 (213966726-213966334)
               

               
               2-492, gnl|rn3|chr13 (92701268-92701657)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-492, gnl|bosTau2|chr16 (23579673-23579188)
               

               
               2-492, gnl|canFam2|chr7 (37250189-37250574)
               

               
               2-492, gnl|dasNov1|scaffold_22968 (11569-11952)
               

               
               2-492, gnl|hg17|chr1 (239630190-239630578)
               

               
               2-492, gnl|Hg17|chr1 (239630916-239630271)
               

               
               2-492, gnl|loxAfr1|scaffold_11171 (22156-22553)
               

               
               2-492, gnl|mm7|chr1 (176707092-176707480)
               

               
               2-492, gnl|Mm7|chr1 (176707655-176707165)
               

               
               2-492, gnl|monDom2|scaffold_13 (40770642-40770263)
               

               
               2-492, gnl|oryCun1|scaffold_85787 (3303-2926)
               

               
               2-492, gnl|panTro1|chr1 (223620726-223621114)
               

               
               2-492, gnl|rheMac2|chr1 (213966726-213966334)
               

               
               2-492, gnl|rn3|chr13 (92701268-92701657)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	2-492, gnl\|bosTau2\|chr16 (23579673-23579188)
	2-492, gnl\|canFam2\|chr7 (37250189-37250574)
	2-492, gnl\|dasNov1\|scaffold_22968 (11569-11952)
	2-492, gnl\|hg17\|chr1 (239630190-239630578)
	2-492, gnl\|Hg17\|chr1 (239630916-239630271)
	2-492, gnl\|loxAfr1\|scaffold_11171 (22156-22553)
	2-492, gnl\|mm7\|chr1 (176707092-176707480)
	2-492, gnl\|Mm7\|chr1 (176707655-176707165)
	2-492, gnl\|monDom2\|scaffold_13 (40770642-40770263)
	2-492, gnl\|oryCun1\|scaffold_85787 (3303-2926)
	2-492, gnl\|panTro1\|chr1 (223620726-223621114)
	2-492, gnl\|rheMac2\|chr1 (213966726-213966334)
	2-492, gnl\|rn3\|chr13 (92701268-92701657)