Ss1.1-rcbl0_019624.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGACGGTCCCGGGCCTGGAGCGAGCAGGAAAGGCGTAAAGGGACACCAGTTAAGTGA CAGGACCGAGCAAGCCGCCAGAAGGGTCCAACTCGCGGCGCGCCCGCCGAGTCATTGTCT CCCTGCCGCGCTGCCTACCTGTAGCGATGAGGTTTTTTCACCCCGCCGGTAGAGGGGGCG CTTTTCCTGGCAGCTTTAGTGGCCAGCTGTTTGCGGGGCGCTTTCCCACCCGTGGACTTA CGAGCAGTCTGCTTGGTTCGGGCCATTTTCTTTTACCTGCAGGAGACACCCGTGACTCGG GGGCCGCGACGCTCGCCTCCCGGGGTGAGACGGCGAGCGTGCAGAGGGCGGGACGCCCGG CGCGCCTGCCCTCCCGCCTCCCTGCGCCCCACGGCGGGCGGCAGATGGCCGAGGGCACGC CGCCTCCACCCCCCCTCCCCTAATGACTCAGGCGGCGAGTAGCAGCAGCCTCCCCTGGGA GGGGGGGCGCGGGGAGGAGTCACTTCCCCTCCTCGACGGGCGGAGGCCCAGCTGCCGGGA ACCCGGAGTCGGGACCTCTGAATCACCAGCGGGAAAGAGGCGGAGACGCGGTTCCGGAGC GAAGCCCCAAGGGAAAACCACCCGACCCCAGAGTCGCCAGCAGCAGTCAGAGCAGCCCGC ACCAGCCGGCACTCAGCTCCCAACGGTCGTGGCCCGCGGCATCAACGGCCGGCAGGGCCT CAAGCCGCAGGCAAAGCCGAGACTTACCCAACAGCGAAGTCTGAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGACGGTCCCGGGCCTGGAGCGAGCAGGAAAGGCGTAAAGGGACACCAGTTAAGTGA CAGGACCGAGCAAGCCGCCAGAAGGGTCCAACTCGCGGCGCGCCCGCCGAGTCATTGTCT CCCTGCCGCGCTGCCTACCTGTAGCGATGAGGTTTTTTCACCCCGCCGGTAGAGGGGGCG CTTTTCCTGGCAGCTTTAGTGGCCAGCTGTTTGCGGGGCGCTTTCCCACCCGTGGACTTA CGAGCAGTCTGCTTGGTTCGGGCCATTTTCTTTTACCTGCAGGAGACACCCGTGACTCGG GGGCCGCGACGCTCGCCTCCCGGGGTGAGACGGCGAGCGTGCAGAGGGCGGGACGCCCGG CGCGCCTGCCCTCCCGCCTCCCTGCGCCCCACGGCGGGCGGCAGATGGCCGAGGGCACGC CGCCTCCACCCCCCCTCCCCTAATGACTCAGGCGGCGAGTAGCAGCAGCCTCCCCTGGGA GGGGGGGCGCGGGGAGGAGTCACTTCCCCTCCTCGACGGGCGGAGGCCCAGCTGCCGGGA ACCCGGAGTCGGGACCTCTGAATCACCAGCGGGAAAGAGGCGGAGACGCGGTTCCGGAGC GAAGCCCCAAGGGAAAACCACCCGACCCCAGAGTCGCCAGCAGCAGTCAGAGCAGCCCGC ACCAGCCGGCACTCAGCTCCCAACGGTCGTGGCCCGCGGCATCAACGGCCGGCAGGGCCT CAAGCCGCAGGCAAAGCCGAGACTTACCCAACAGCGAAGTCTGAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 391-589, - strand, RNAz p=0.800766 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 391-589, - strand, RNAz p=0.800766 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-768, gnl|bosTau2|chr19 (49797307-49796557) | |
| 1-768, gnl|Hg17|chr17 (71286623-71287353) | |
| 1-768, gnl|Mm7|chr11 (116132807-116133443) | |
| 138-266, gnl|bosTau2|chr11 (1692631-1692759) | |
| 138-266, gnl|canFam2|chr1 (22135417-22135555) | |
| 138-266, gnl|danRer3|chr7 (2300191-2300053) | |
| 138-266, gnl|dasNov1|scaffold_126795 (3057-3195) | |
| 138-266, gnl|echTel1|scaffold_164222 (5274-5136) | |
| 138-266, gnl|fr1|chrUn (266355579-266355444) | |
| 138-266, gnl|galGal2|chr1 (44829598-44829473) | |
| 138-266, gnl|Hg17|chr2 (175410271-175410143) | |
| 138-266, gnl|hg17|chr5 (115134173-115134311) | |
| 138-266, gnl|loxAfr1|scaffold_29622 (9196-9334) | |
| 138-266, gnl|mm7|chr16 (91164511-91164373) | |
| 138-266, gnl|Mm7|chr16 (91164372-91164500) | |
| 138-266, gnl|monDom2|scaffold_25 (6386718-6386580) | |
| 138-266, gnl|oryCun1|scaffold_157692 (1120-982) | |
| 138-266, gnl|panTro1|chr4 (121305330-121305467) | |
| 138-266, gnl|rheMac2|chr6 (112177071-112177209) | |
| 138-266, gnl|rn3|chr7 (91656372-91656510) | |
| 138-266, gnl|tetNig1|chr16 (7794286-7794416) | |
| 138-266, gnl|xenTro1|scaffold_215 (1518634-1518510) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-768, gnl|bosTau2|chr19 (49797307-49796557) | |
| 1-768, gnl|Hg17|chr17 (71286623-71287353) | |
| 1-768, gnl|Mm7|chr11 (116132807-116133443) | |
| 138-266, gnl|bosTau2|chr11 (1692631-1692759) | |
| 138-266, gnl|canFam2|chr1 (22135417-22135555) | |
| 138-266, gnl|danRer3|chr7 (2300191-2300053) | |
| 138-266, gnl|dasNov1|scaffold_126795 (3057-3195) | |
| 138-266, gnl|echTel1|scaffold_164222 (5274-5136) | |
| 138-266, gnl|fr1|chrUn (266355579-266355444) | |
| 138-266, gnl|galGal2|chr1 (44829598-44829473) | |
| 138-266, gnl|Hg17|chr2 (175410271-175410143) | |
| 138-266, gnl|hg17|chr5 (115134173-115134311) | |
| 138-266, gnl|loxAfr1|scaffold_29622 (9196-9334) | |
| 138-266, gnl|mm7|chr16 (91164511-91164373) | |
| 138-266, gnl|Mm7|chr16 (91164372-91164500) | |
| 138-266, gnl|monDom2|scaffold_25 (6386718-6386580) | |
| 138-266, gnl|oryCun1|scaffold_157692 (1120-982) | |
| 138-266, gnl|panTro1|chr4 (121305330-121305467) | |
| 138-266, gnl|rheMac2|chr6 (112177071-112177209) | |
| 138-266, gnl|rn3|chr7 (91656372-91656510) | |
| 138-266, gnl|tetNig1|chr16 (7794286-7794416) | |
| 138-266, gnl|xenTro1|scaffold_215 (1518634-1518510) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| ese (0.126502) | |
| eru (0.120048) |