Non-Coding RNA Search

Ss1.1-rcbl0_019667.5

Sequence:


               
               TGGTGCCAAAAACTGACTTGTTACTCTTGGGCCTAAGGACTCCCCAGAGAAGGAGGCTTA
TTTCTACCACCAGCTGTGATTTCTTTCCTGGAGGCTTTCAGGTTATATTTCTGTGTTTTA
ATGGAGGAAGGAATGTAGCCATTGGGGAAAAGTGTGAGTAGGGTTAAAAATGTACTGTTG
------------------------------------------------------------
------------TCATTCGTTGGGTTAAGGATCCAGCATTTCCATGAGCTGTAGTGTAGG
ATGCTCAGATCCCGTGTGGCTGTTGCTGTGGTGTAGGCCAGCAGCTGATTCGACCCCTAG
CCTGGGAAGTTCCGTATGCCTCAACCTAAAAAGCAAAATAAATAAATAAAAATAAAAAAA
ATTATTGTTGAAATGAAAACATCTCTTTGGTGACCTGTGACCTGTAATGAATTTCTTTCC
TTCTAATGCGTTTTATGGGATCTCTTTTTCACTTTTTTTTTAGAAGAGGTCAGAGCATAG
ATCATTGGAATCTTGGGGCCAATGTATTAATGTATTTCAAATTATATGTTCTAAGGGGTG
TTCATACAGAAAGTAATCATCTTAGGTCTTTTTTCACATACTTGAAATTATTCACATTAA
GGAGAAGGAAATAATTGTACTATCAGGTAATAGTGTACCTTTTAATGGAAAATGTCCACG
ATTATGATATTTAAATAACAGCCTTATGCTGACAAAACATTTTTCTTTTTACAGAGCGCT
TTCATGAGTGCTACTCATTCAGTGGTATAGTTTGGATTTTTTTGGTATTAACCTGTTACT
TTCTGCTTTTAGAACCCTAAAGGGACCTATGAAATGAAGACTAGTTGATTTTTTGTATAA
CTTACTAAGTGAAAACCTATTACATTCTCTTTCCAGTAGGGAAGAAGTTCACTGAGGAAT
GCTTTCAAGCACAAAGTGGTGAATGACTGCCTTCAAATCTCAAGAAAACACTGCTCTAGC
CAAATGACTTTTAGATATTGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGCCAAAAACTGACTTGTTACTCTTGGGCCTAAGGACTCCCCAGAGAAGGAGGCTTA
TTTCTACCACCAGCTGTGATTTCTTTCCTGGAGGCTTTCAGGTTATATTTCTGTGTTTTA
ATGGAGGAAGGAATGTAGCCATTGGGGAAAAGTGTGAGTAGGGTTAAAAATGTACTGTTG
------------------------------------------------------------
------------TCATTCGTTGGGTTAAGGATCCAGCATTTCCATGAGCTGTAGTGTAGG
ATGCTCAGATCCCGTGTGGCTGTTGCTGTGGTGTAGGCCAGCAGCTGATTCGACCCCTAG
CCTGGGAAGTTCCGTATGCCTCAACCTAAAAAGCAAAATAAATAAATAAAAATAAAAAAA
ATTATTGTTGAAATGAAAACATCTCTTTGGTGACCTGTGACCTGTAATGAATTTCTTTCC
TTCTAATGCGTTTTATGGGATCTCTTTTTCACTTTTTTTTTAGAAGAGGTCAGAGCATAG
ATCATTGGAATCTTGGGGCCAATGTATTAATGTATTTCAAATTATATGTTCTAAGGGGTG
TTCATACAGAAAGTAATCATCTTAGGTCTTTTTTCACATACTTGAAATTATTCACATTAA
GGAGAAGGAAATAATTGTACTATCAGGTAATAGTGTACCTTTTAATGGAAAATGTCCACG
ATTATGATATTTAAATAACAGCCTTATGCTGACAAAACATTTTTCTTTTTACAGAGCGCT
TTCATGAGTGCTACTCATTCAGTGGTATAGTTTGGATTTTTTTGGTATTAACCTGTTACT
TTCTGCTTTTAGAACCCTAAAGGGACCTATGAAATGAAGACTAGTTGATTTTTTGTATAA
CTTACTAAGTGAAAACCTATTACATTCTCTTTCCAGTAGGGAAGAAGTTCACTGAGGAAT
GCTTTCAAGCACAAAGTGGTGAATGACTGCCTTCAAATCTCAAGAAAACACTGCTCTAGC
CAAATGACTTTTAGATATTGCAAA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-169, gnl|bosTau2|chr8 (55778284-55778448)
               

               
               1-169, gnl|Hg17|chr9 (111509432-111509598)
               


               
               521-970, gnl|bosTau2|chr8 (55778860-55779316)
               

               
               521-970, gnl|Hg17|chr9 (111510068-111511205)
               

               
               521-970, gnl|Mm7|chr4 (59082156-59082567)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr8 (55778284-55778448)
               

               
               1-169, gnl|Hg17|chr9 (111509432-111509598)
               


               
               521-970, gnl|bosTau2|chr8 (55778860-55779316)
               

               
               521-970, gnl|Hg17|chr9 (111510068-111511205)
               

               
               521-970, gnl|Mm7|chr4 (59082156-59082567)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

	1-169, gnl\|bosTau2\|chr8 (55778284-55778448)
	1-169, gnl\|Hg17\|chr9 (111509432-111509598)

	521-970, gnl\|bosTau2\|chr8 (55778860-55779316)
	521-970, gnl\|Hg17\|chr9 (111510068-111511205)
	521-970, gnl\|Mm7\|chr4 (59082156-59082567)