Ss1.1-rcbl0_019720.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGACCCAAGATGGACAGAATATTGGAATCAAGCACATTCCTTCAACTCAGTGTGGCA TTTGGGTTCGAACCAGCAATGGAGGTCATTTTGCTTCACCAAATTATCCTGACTCATATC CACCAAACAAGGAATGTATCTACATTTTGGAAGCTGCTCCTCGCCAAAGGATAGAATTGA CCTTTGATGAGCGTTATTATATAGAACCATCATTTGAATGTCGGTTTGATCACTTGGAAG TTCGAGATGGGCCTTTCGGTTTCTCTCCACTGATAGATCGTTACTGTGGTGTGAAAAGCC CTCCGTTAATTAGATCAACAGGGAGATTCATGTGGATCAAGTTTAGTTCTGATGAAGAAC TTGAAGGACTGGGATTTCGAGCAAAATACTCGTTTATTCCAGATCCAGATTTTACTTACC TAGGAGATTGCCAGTTTGAGCTGTCAGGAGCTGATGGAATAGTGCGTTCTAGTCAGGTAG AACAAGAAGAAAAAACAAAACCTGGCCAAGCAGTTGATTGCATATGGACGATTAAAGCTA CTCCAAAAGCTAAGGTATTACTATGTATGCAATCACTTCAGAGAGGAACATAATGAGATG TGATTTGTATAATGTATTATTTTGGTTCATGCAGATACTTACTGATTATCCAAACTGACG TTACAACTTACAAAAAAATATTTTTTCAGTCACATTGTCAAACACGTCTTAACATCCCAC CATTGTTATAGTTAAATAAACTATAATATAAACGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGACCCAAGATGGACAGAATATTGGAATCAAGCACATTCCTTCAACTCAGTGTGGCA TTTGGGTTCGAACCAGCAATGGAGGTCATTTTGCTTCACCAAATTATCCTGACTCATATC CACCAAACAAGGAATGTATCTACATTTTGGAAGCTGCTCCTCGCCAAAGGATAGAATTGA CCTTTGATGAGCGTTATTATATAGAACCATCATTTGAATGTCGGTTTGATCACTTGGAAG TTCGAGATGGGCCTTTCGGTTTCTCTCCACTGATAGATCGTTACTGTGGTGTGAAAAGCC CTCCGTTAATTAGATCAACAGGGAGATTCATGTGGATCAAGTTTAGTTCTGATGAAGAAC TTGAAGGACTGGGATTTCGAGCAAAATACTCGTTTATTCCAGATCCAGATTTTACTTACC TAGGAGATTGCCAGTTTGAGCTGTCAGGAGCTGATGGAATAGTGCGTTCTAGTCAGGTAG AACAAGAAGAAAAAACAAAACCTGGCCAAGCAGTTGATTGCATATGGACGATTAAAGCTA CTCCAAAAGCTAAGGTATTACTATGTATGCAATCACTTCAGAGAGGAACATAATGAGATG TGATTTGTATAATGTATTATTTTGGTTCATGCAGATACTTACTGATTATCCAAACTGACG TTACAACTTACAAAAAAATATTTTTTCAGTCACATTGTCAAACACGTCTTAACATCCCAC CATTGTTATAGTTAAATAAACTATAATATAAACGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 285-402, + strand, RNAz p=0.779433 | |
| 302-402, + strand, RNAz p=0.984063 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 285-402, + strand, RNAz p=0.779433 | |
| 302-402, + strand, RNAz p=0.984063 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 152-402, gnl|bosTau2|chr18 (15889745-15889495) | |
| 152-402, gnl|canFam2|chr2 (70680864-70681077) | |
| 152-402, gnl|danRer3|chr7 (35122777-35122576) | |
| 152-402, gnl|dasNov1|scaffold_31349 (4858-4645) | |
| 152-402, gnl|echTel1|scaffold_301582 (1469-1256) | |
| 152-402, gnl|fr1|chrUn (207493685-207493878) | |
| 152-402, gnl|galGal2|chr11 (7869061-7869274) | |
| 152-402, gnl|Hg17|chr16 (45719987-45719737) | |
| 152-402, gnl|hg17|chr8 (125223478-125223679) | |
| 152-402, gnl|loxAfr1|scaffold_99523 (4797-4567) | |
| 152-402, gnl|mm7|chr8 (84260494-84260282) | |
| 152-402, gnl|Mm7|chr8 (84260495-84260245) | |
| 152-402, gnl|monDom2|scaffold_35 (11222491-11222278) | |
| 152-402, gnl|oryCun1|scaffold_129367 (1056-844) | |
| 152-402, gnl|panTro1|chr7 (127952915-127953116) | |
| 152-402, gnl|rheMac2|chr8 (126720147-126720351) | |
| 152-402, gnl|rn3|chr19 (22740433-22740645) | |
| 152-402, gnl|tetNig1|chrUn_random (136219857-136220034) | |
| 152-402, gnl|xenTro1|scaffold_555 (378861-378648) | |
| 425-756, gnl|bosTau2|chr18 (15884371-15884047) | |
| 425-756, gnl|Hg17|chr16 (45714198-45713858) | |
| 425-756, gnl|Mm7|chr8 (84254019-84253707) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-402, gnl|bosTau2|chr18 (15889745-15889495) | |
| 152-402, gnl|canFam2|chr2 (70680864-70681077) | |
| 152-402, gnl|danRer3|chr7 (35122777-35122576) | |
| 152-402, gnl|dasNov1|scaffold_31349 (4858-4645) | |
| 152-402, gnl|echTel1|scaffold_301582 (1469-1256) | |
| 152-402, gnl|fr1|chrUn (207493685-207493878) | |
| 152-402, gnl|galGal2|chr11 (7869061-7869274) | |
| 152-402, gnl|Hg17|chr16 (45719987-45719737) | |
| 152-402, gnl|hg17|chr8 (125223478-125223679) | |
| 152-402, gnl|loxAfr1|scaffold_99523 (4797-4567) | |
| 152-402, gnl|mm7|chr8 (84260494-84260282) | |
| 152-402, gnl|Mm7|chr8 (84260495-84260245) | |
| 152-402, gnl|monDom2|scaffold_35 (11222491-11222278) | |
| 152-402, gnl|oryCun1|scaffold_129367 (1056-844) | |
| 152-402, gnl|panTro1|chr7 (127952915-127953116) | |
| 152-402, gnl|rheMac2|chr8 (126720147-126720351) | |
| 152-402, gnl|rn3|chr19 (22740433-22740645) | |
| 152-402, gnl|tetNig1|chrUn_random (136219857-136220034) | |
| 152-402, gnl|xenTro1|scaffold_555 (378861-378648) | |
| 425-756, gnl|bosTau2|chr18 (15884371-15884047) | |
| 425-756, gnl|Hg17|chr16 (45714198-45713858) | |
| 425-756, gnl|Mm7|chr8 (84254019-84253707) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |