Non-Coding RNA Search

Ss1.1-rcbl0_019755.5

Sequence:


               
               GTACCAAGGCGGTGGGCAGCTACTCTCGCATGGATGTCACGGAAAAGTACAAGTACCCAG
AAGGTTCCAGGGCAGGAAAGACAAGCATTTGAAAAGGCTCTGGGGAAACTTAAGCCCAGG
TTGTCATTTGGCCCAACATCGGCAAGAACTTTCACAAGAGATGAACGAGAGGAACGAGAG
GAACGGGAGCCCAGCATCTCTGGGAGGTTCAAGGTCACGGGCCTACTGGCCGTGGGCAAA
GAAGTCAACCTGGCCCTGATGCTCAAAAACCTAACGGATGATAAGAAGACGGTGACAGTG
AACATGTCAGCCTGGACCATCGTCTACAATGGCACACTCGTACACGAGGTGTGGAAGGAC
TCCATCACCATATCTCTGGATCCTAAAGAAGAAATACAGCACCCTGTAAAGATCGCATAT
GCTCAGTATGAGAAGTACCTGAAAGCAGACAACATGATCCGGATCACAGCTGTGTGCCAG
GTCACCGACGAGCCCGAGGTGGTGGTGGAGAGAAACGTCATCCTGGACAACCCTACCCTG
ACCCTGGAGGTGCTGGACCAGGCCCGGGTGAAGAAGCCCGTGAATGTGCAGATGCTCTTC
GCCAACCCGCTGGATGAGCCCGTGAAGGACTGCGTGCTGAAGGTGGAGGGTAGCGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCAAGGCGGTGGGCAGCTACTCTCGCATGGATGTCACGGAAAAGTACAAGTACCCAG
AAGGTTCCAGGGCAGGAAAGACAAGCATTTGAAAAGGCTCTGGGGAAACTTAAGCCCAGG
TTGTCATTTGGCCCAACATCGGCAAGAACTTTCACAAGAGATGAACGAGAGGAACGAGAG
GAACGGGAGCCCAGCATCTCTGGGAGGTTCAAGGTCACGGGCCTACTGGCCGTGGGCAAA
GAAGTCAACCTGGCCCTGATGCTCAAAAACCTAACGGATGATAAGAAGACGGTGACAGTG
AACATGTCAGCCTGGACCATCGTCTACAATGGCACACTCGTACACGAGGTGTGGAAGGAC
TCCATCACCATATCTCTGGATCCTAAAGAAGAAATACAGCACCCTGTAAAGATCGCATAT
GCTCAGTATGAGAAGTACCTGAAAGCAGACAACATGATCCGGATCACAGCTGTGTGCCAG
GTCACCGACGAGCCCGAGGTGGTGGTGGAGAGAAACGTCATCCTGGACAACCCTACCCTG
ACCCTGGAGGTGCTGGACCAGGCCCGGGTGAAGAAGCCCGTGAATGTGCAGATGCTCTTC
GCCAACCCGCTGGATGAGCCCGTGAAGGACTGCGTGCTGAAGGTGGAGGGTAGCGGCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882591|ref|XP_581311.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882591|ref|XP_581311.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               171-391, gnl|bosTau2|chr13 (34002077-34002297)
               

               
               171-391, gnl|Hg17|chr20 (2260736-2260956)
               

               
               171-391, gnl|Mm7|chr2 (129782698-129782918)
               


               
               536-660, gnl|bosTau2|chr13 (34007861-34007985)
               

               
               536-660, gnl|Hg17|chr20 (2268485-2268610)
               

               
               536-660, gnl|Mm7|chr2 (129788527-129788651)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-391, gnl|bosTau2|chr13 (34002077-34002297)
               

               
               171-391, gnl|Hg17|chr20 (2260736-2260956)
               

               
               171-391, gnl|Mm7|chr2 (129782698-129782918)
               


               
               536-660, gnl|bosTau2|chr13 (34007861-34007985)
               

               
               536-660, gnl|Hg17|chr20 (2268485-2268610)
               

               
               536-660, gnl|Mm7|chr2 (129788527-129788651)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.575043)
               

               
               cbl (0.229595)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.575043)
               

               
               cbl (0.229595)

	171-391, gnl\|bosTau2\|chr13 (34002077-34002297)
	171-391, gnl\|Hg17\|chr20 (2260736-2260956)
	171-391, gnl\|Mm7\|chr2 (129782698-129782918)

	536-660, gnl\|bosTau2\|chr13 (34007861-34007985)
	536-660, gnl\|Hg17\|chr20 (2268485-2268610)
	536-660, gnl\|Mm7\|chr2 (129788527-129788651)