Non-Coding RNA Search

Ss1.1-rcbl0_019841.5

Sequence:


               
               TATTTTTAATATATAAGTACTCATTCTTATTTTCTAATTGTTCCTCCTTCCTAGTATTAC
ATTCTTGTTTTATGAATTCACTATCTCCATCTTATCTCTCTGAAGGTATTCCTTATTCTT
CATTTGTCTATTAGTTTTAGTATTCTTCTGTTCTCTAAATGGTCTTTGTTTCTACTTCTT
TTAGTTTTTTTTCTCTCTCTCTTTCCTATTGGAGGCTTTTCCTCAAATGTCAAAAATTAT
CTATCGATATTTATGAACAAAAGCAATAAGAAGCTGAATTAAACTGGATTGGGGAAAAAC
TTATCAACTGGGGCTTCACTATAGTAAGGAAGCCAGTCTTTTCTTTAACAAACCTCTAAA
TGTCAGACTTTTTTCTCTAGAGCTGCATTTTTTAACCTTGGCATGTTAACGTTTTGGGCA
AAATAATTCCTTGTGGTCAGAAGCTCTTGTCTCTTGTAGAATGTTTAGCAGCATCATCGA
ACTCTGCCCACCAGCTGCCAGTAGTAACCCCCCTCCCTGATTTGTGATAACCAAAAGTGT
CTGTATATGTTGCTAAGTGTCCCCTGGGGGCAAAATCACCCTATTGAGAACGGCTATTCT
AGAGTCATGCAGCTTCTCAAGAGAAGCATCCTAACTCCCTGTTCCAGTTTTCGTTACTGC
GTAACAAACCACCCCAATACTCATAGCATAAACAACAACCATTTATTGTGCTGCAAGTCA
GCAGTTCAGGAAAGGATTAGCTCTTTTCTGCTCCACAGTATCCGGTGTCTAGGCTGAGAT
GGCTGGGAGTCGAAACCATCTGGGGCTGAAGGATCCACTTCTAAGATGGCACTTTACTTG
GCAGGGATAGCTGGAAGACTGGGTGCAGCTGGACCTGGAGACCAGATAGACTACACATGG
CCCCGGAAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTTAATATATAAGTACTCATTCTTATTTTCTAATTGTTCCTCCTTCCTAGTATTAC
ATTCTTGTTTTATGAATTCACTATCTCCATCTTATCTCTCTGAAGGTATTCCTTATTCTT
CATTTGTCTATTAGTTTTAGTATTCTTCTGTTCTCTAAATGGTCTTTGTTTCTACTTCTT
TTAGTTTTTTTTCTCTCTCTCTTTCCTATTGGAGGCTTTTCCTCAAATGTCAAAAATTAT
CTATCGATATTTATGAACAAAAGCAATAAGAAGCTGAATTAAACTGGATTGGGGAAAAAC
TTATCAACTGGGGCTTCACTATAGTAAGGAAGCCAGTCTTTTCTTTAACAAACCTCTAAA
TGTCAGACTTTTTTCTCTAGAGCTGCATTTTTTAACCTTGGCATGTTAACGTTTTGGGCA
AAATAATTCCTTGTGGTCAGAAGCTCTTGTCTCTTGTAGAATGTTTAGCAGCATCATCGA
ACTCTGCCCACCAGCTGCCAGTAGTAACCCCCCTCCCTGATTTGTGATAACCAAAAGTGT
CTGTATATGTTGCTAAGTGTCCCCTGGGGGCAAAATCACCCTATTGAGAACGGCTATTCT
AGAGTCATGCAGCTTCTCAAGAGAAGCATCCTAACTCCCTGTTCCAGTTTTCGTTACTGC
GTAACAAACCACCCCAATACTCATAGCATAAACAACAACCATTTATTGTGCTGCAAGTCA
GCAGTTCAGGAAAGGATTAGCTCTTTTCTGCTCCACAGTATCCGGTGTCTAGGCTGAGAT
GGCTGGGAGTCGAAACCATCTGGGGCTGAAGGATCCACTTCTAAGATGGCACTTTACTTG
GCAGGGATAGCTGGAAGACTGGGTGCAGCTGGACCTGGAGACCAGATAGACTACACATGG
CCCCGGAAGGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               543-737, - strand, RNAz p=0.956203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-737, - strand, RNAz p=0.956203

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-902, gnl|bosTau2|chr7 (21040282-21041148)
               

               
               1-902, gnl|Hg17|chr5 (131816412-131817489)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-902, gnl|bosTau2|chr7 (21040282-21041148)
               

               
               1-902, gnl|Hg17|chr5 (131816412-131817489)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.229595)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               cty (0.10408)

	1-902, gnl\|bosTau2\|chr7 (21040282-21041148)
	1-902, gnl\|Hg17\|chr5 (131816412-131817489)