Ss1.1-rcbl0_019996.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTCGCCGCCTTCAAGTTTAGACTACATTTCTAAGACAAAAGAAGATGTCAAACTGAAA TTAGAGGAATGTTCCAAAAGAGCAAATAATGGGAAATTTACTCTTCGAGATTTGCTTGTG GTTCCTATGCAGCGTGTTTTAAAGTATCACCTTCTCCTCCAGGAGCTGGTCAAACATACC ACTGACCCTATGGAGAAGGCCAATCTAAAACTGGCTCTTGATGCAATGAAGGACTTGGCG CAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAG CTATCTATAGAAAATTTGAACCAACCAGTTTTGCTTTTTGGGCGACCTCAGGGAGATGGT GAAATTCGAATAACCACACTTGACAAGCATACAAAGCAAGAAAGGCATATCTTCTTATTT GATTTGGCAGTGATCGTATGTAAAAGGAAAGGTGATAACTATGAAATGAAGGAAATAATA GATCTTCAGCAGTACAAAATAGCCAACAATCCAACAACCGATAAAGAAAATAAAAAGTGG TCTTACGGCTTCTACCTCATCCATATCCAAGGACAAAATGGGTTAGAATTTTATTGCAAA ACAAAAGATTTAAAGAAGAAGTGGCTGGAACAGTTCGAAATGGCTTTATCCAACATAAGG CCCGACTACGCAGACTCCAATTTTCATGAGTTCAAGATGCACACCTTCAGCCGGGTTACC TCCTGCAAAGTCTGCCAGATGCTCCTGAGGGGGACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTCGCCGCCTTCAAGTTTAGACTACATTTCTAAGACAAAAGAAGATGTCAAACTGAAA TTAGAGGAATGTTCCAAAAGAGCAAATAATGGGAAATTTACTCTTCGAGATTTGCTTGTG GTTCCTATGCAGCGTGTTTTAAAGTATCACCTTCTCCTCCAGGAGCTGGTCAAACATACC ACTGACCCTATGGAGAAGGCCAATCTAAAACTGGCTCTTGATGCAATGAAGGACTTGGCG CAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAG CTATCTATAGAAAATTTGAACCAACCAGTTTTGCTTTTTGGGCGACCTCAGGGAGATGGT GAAATTCGAATAACCACACTTGACAAGCATACAAAGCAAGAAAGGCATATCTTCTTATTT GATTTGGCAGTGATCGTATGTAAAAGGAAAGGTGATAACTATGAAATGAAGGAAATAATA GATCTTCAGCAGTACAAAATAGCCAACAATCCAACAACCGATAAAGAAAATAAAAAGTGG TCTTACGGCTTCTACCTCATCCATATCCAAGGACAAAATGGGTTAGAATTTTATTGCAAA ACAAAAGATTTAAAGAAGAAGTGGCTGGAACAGTTCGAAATGGCTTTATCCAACATAAGG CCCGACTACGCAGACTCCAATTTTCATGAGTTCAAGATGCACACCTTCAGCCGGGTTACC TCCTGCAAAGTCTGCCAGATGCTCCTGAGGGGGACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 641-750, - strand, RNAz p=0.518455 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 641-750, - strand, RNAz p=0.518455 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 403-537, gnl|bosTau2|chr3 (29431777-29431911) | |
| 403-537, gnl|canFam2|chr6 (46894669-46894524) | |
| 403-537, gnl|danRer3|chr24 (27796808-27796953) | |
| 403-537, gnl|dasNov1|scaffold_33 (151019-151164) | |
| 403-537, gnl|echTel1|scaffold_183795 (5802-5947) | |
| 403-537, gnl|fr1|chrUn (149125831-149125976) | |
| 403-537, gnl|galGal2|chr8 (1038413-1038558) | |
| 403-537, gnl|hg17|chr1 (108004124-108004269) | |
| 403-537, gnl|Hg17|chr1 (108004260-108004126) | |
| 403-537, gnl|mm7|chr3 (109345838-109345693) | |
| 403-537, gnl|Mm7|chr3 (109345700-109345834) | |
| 403-537, gnl|monDom2|scaffold_0 (9022811-9022666) | |
| 403-537, gnl|oryCun1|scaffold_178967 (46875-47020) | |
| 403-537, gnl|panTro1|chr1 (107114517-107114662) | |
| 403-537, gnl|rheMac2|chr1 (110659680-110659825) | |
| 403-537, gnl|rn3|chr2 (205130915-205130770) | |
| 403-537, gnl|tetNig1|chrUn_random (52737784-52737928) | |
| 403-537, gnl|xenTro1|scaffold_527 (282831-282975) | |
| 641-750, gnl|bosTau2|chr3 (29475443-29475552) | |
| 641-750, gnl|canFam2|chr6 (46935811-46935734) | |
| 641-750, gnl|danRer3|chr24 (27789252-27789329) | |
| 641-750, gnl|dasNov1|scaffold_33 (119350-119427) | |
| 641-750, gnl|echTel1|scaffold_324709 (3068-2991) | |
| 641-750, gnl|galGal2|chr8 (1022132-1022209) | |
| 641-750, gnl|hg17|chr1 (107959620-107959697) | |
| 641-750, gnl|Hg17|chr1 (107959731-107959623) | |
| 641-750, gnl|loxAfr1|scaffold_99677 (90-10) | |
| 641-750, gnl|mm7|chr3 (109381138-109381061) | |
| 641-750, gnl|Mm7|chr3 (109381026-109381133) | |
| 641-750, gnl|monDom2|scaffold_0 (9071410-9071333) | |
| 641-750, gnl|oryCun1|scaffold_178967 (11215-11292) | |
| 641-750, gnl|panTro1|chr1 (107064968-107065045) | |
| 641-750, gnl|rheMac2|chr1 (110606979-110607056) | |
| 641-750, gnl|rn3|chr2 (205175408-205175331) | |
| 641-750, gnl|tetNig1|chrUn_random (52734690-52734767) | |
| 641-750, gnl|xenTro1|scaffold_527 (276892-276969) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 403-537, gnl|bosTau2|chr3 (29431777-29431911) | |
| 403-537, gnl|canFam2|chr6 (46894669-46894524) | |
| 403-537, gnl|danRer3|chr24 (27796808-27796953) | |
| 403-537, gnl|dasNov1|scaffold_33 (151019-151164) | |
| 403-537, gnl|echTel1|scaffold_183795 (5802-5947) | |
| 403-537, gnl|fr1|chrUn (149125831-149125976) | |
| 403-537, gnl|galGal2|chr8 (1038413-1038558) | |
| 403-537, gnl|hg17|chr1 (108004124-108004269) | |
| 403-537, gnl|Hg17|chr1 (108004260-108004126) | |
| 403-537, gnl|mm7|chr3 (109345838-109345693) | |
| 403-537, gnl|Mm7|chr3 (109345700-109345834) | |
| 403-537, gnl|monDom2|scaffold_0 (9022811-9022666) | |
| 403-537, gnl|oryCun1|scaffold_178967 (46875-47020) | |
| 403-537, gnl|panTro1|chr1 (107114517-107114662) | |
| 403-537, gnl|rheMac2|chr1 (110659680-110659825) | |
| 403-537, gnl|rn3|chr2 (205130915-205130770) | |
| 403-537, gnl|tetNig1|chrUn_random (52737784-52737928) | |
| 403-537, gnl|xenTro1|scaffold_527 (282831-282975) | |
| 641-750, gnl|bosTau2|chr3 (29475443-29475552) | |
| 641-750, gnl|canFam2|chr6 (46935811-46935734) | |
| 641-750, gnl|danRer3|chr24 (27789252-27789329) | |
| 641-750, gnl|dasNov1|scaffold_33 (119350-119427) | |
| 641-750, gnl|echTel1|scaffold_324709 (3068-2991) | |
| 641-750, gnl|galGal2|chr8 (1022132-1022209) | |
| 641-750, gnl|hg17|chr1 (107959620-107959697) | |
| 641-750, gnl|Hg17|chr1 (107959731-107959623) | |
| 641-750, gnl|loxAfr1|scaffold_99677 (90-10) | |
| 641-750, gnl|mm7|chr3 (109381138-109381061) | |
| 641-750, gnl|Mm7|chr3 (109381026-109381133) | |
| 641-750, gnl|monDom2|scaffold_0 (9071410-9071333) | |
| 641-750, gnl|oryCun1|scaffold_178967 (11215-11292) | |
| 641-750, gnl|panTro1|chr1 (107064968-107065045) | |
| 641-750, gnl|rheMac2|chr1 (110606979-110607056) | |
| 641-750, gnl|rn3|chr2 (205175408-205175331) | |
| 641-750, gnl|tetNig1|chrUn_random (52734690-52734767) | |
| 641-750, gnl|xenTro1|scaffold_527 (276892-276969) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.573987) |