Non-Coding RNA Search

Ss1.1-rcbl0_020041.5

Sequence:


               
               AGGGGTGCCCCACCCCTTCCTCCCATCCCGAGGTGATCCTTGCCTGCTTTTCTCCACCCA
AGCCCAAGCGCTCCTTCTGTTGTTGCTGTCCAAGAGTCACACACCTCCTCCCCCTTTTTT
CCCTTGTCCCCTTCACATCAGCAGTAGGGAAGAAGGGAGATGACACGGAAATCTATGTGT
GCAGGGTGGGAATGCAGTAAAGAAACGCACCTCGCTTTTCATATTGTATATATTCTTAAA
GCTAGTGCTTACTTCAGCTACAACCTGCCAGTGTTGGCTGCTTTAGGGATGCCATAGGCT
TTTGTGGCAGGTAGGCAGAAATGAATTCTGTCTGAGCTTTCAACCAGCCAAATTCAAACA
TTCACTGCTTCTTTGCTACAGACTACAATATTAAAGTCCCTGAGAGCTGTCTGCCCCCAT
GCCTTTTTTTGCATGCTTGGCCCCCTGTCTGTTTCCATGAACCACAGACCACCTAAGCAA
GTTTCTCACATAAAATGTTTGTGATTATAGGATGTTCAATCTTTGGCAGACTGAGGTAAG
CTCTAGGACAGAGCTGTCCAACAGAAATACGAGCCATATATACAATTTAAAATTTTCTAG
TAGCCATGTTAAAAAAGGGAAAGAAATAGGTGAAATCAAATTTAATATATTTATTTAACC
CCAACATCCAAAACATGATCATTTCAACTTGCAATCACTCTAACAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGTGCCCCACCCCTTCCTCCCATCCCGAGGTGATCCTTGCCTGCTTTTCTCCACCCA
AGCCCAAGCGCTCCTTCTGTTGTTGCTGTCCAAGAGTCACACACCTCCTCCCCCTTTTTT
CCCTTGTCCCCTTCACATCAGCAGTAGGGAAGAAGGGAGATGACACGGAAATCTATGTGT
GCAGGGTGGGAATGCAGTAAAGAAACGCACCTCGCTTTTCATATTGTATATATTCTTAAA
GCTAGTGCTTACTTCAGCTACAACCTGCCAGTGTTGGCTGCTTTAGGGATGCCATAGGCT
TTTGTGGCAGGTAGGCAGAAATGAATTCTGTCTGAGCTTTCAACCAGCCAAATTCAAACA
TTCACTGCTTCTTTGCTACAGACTACAATATTAAAGTCCCTGAGAGCTGTCTGCCCCCAT
GCCTTTTTTTGCATGCTTGGCCCCCTGTCTGTTTCCATGAACCACAGACCACCTAAGCAA
GTTTCTCACATAAAATGTTTGTGATTATAGGATGTTCAATCTTTGGCAGACTGAGGTAAG
CTCTAGGACAGAGCTGTCCAACAGAAATACGAGCCATATATACAATTTAAAATTTTCTAG
TAGCCATGTTAAAAAAGGGAAAGAAATAGGTGAAATCAAATTTAATATATTTATTTAACC
CCAACATCCAAAACATGATCATTTCAACTTGCAATCACTCTAACAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-196, + strand, RNAz p=0.908796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-196, + strand, RNAz p=0.908796

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               86-226, - strand, RNAmicro p=0.998213

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-226, - strand, RNAmicro p=0.998213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX640870, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX640870, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr2 (14565722-14565020)
               

               
               1-708, gnl|Hg17|chr2 (175252817-175252149)
               

               
               1-708, gnl|Mm7|chr2 (73276161-73275550)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr2 (14565722-14565020)
               

               
               1-708, gnl|Hg17|chr2 (175252817-175252149)
               

               
               1-708, gnl|Mm7|chr2 (73276161-73275550)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.573987)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               pla (0.133672)

	1-708, gnl\|bosTau2\|chr2 (14565722-14565020)
	1-708, gnl\|Hg17\|chr2 (175252817-175252149)
	1-708, gnl\|Mm7\|chr2 (73276161-73275550)