Non-Coding RNA Search

Ss1.1-rcbl0_020229.5

Sequence:


               
               GTGACCTCAGCCTGCTCATCCTACTGCCAGAAGACATCAGTGGGCTGGATCAGCTGGAAA
AGGCCATCACCTATGAGAATCTGAGTGAGTGGACCAGTGCAGACATGATGGAATTGTATG
AGGTGGAGCTGCACCTTCCCAAGTTCAAACTGGAAGAGACTTATGATCTCAAGTCAACCC
TGAGCAGTATGGGAATGAGTGATGCCTTTAGCCAGAGCAAAGCTGATTTCTCAGGAATGT
CTCTGGAGAGAAACCTATTTCTGTCCAATGTTTTCCACAAGTCTTTTGTGGAAGTAAATG
AACAAGGTACAGAGGCTGCAGGAGGCACTGGGAGTGAGGTGAGTTTTCGAATTAAACTCC
CCTCCATTGAAATCAATGCAGATCACCCATTCCTCTTCTTCATCAGGCACAACAAAACCA
ACAGCATTCTTTTTTATGGGAGATTCTGCTCCCCCTAGACCCTGCATCTCTCTCCTCAAG
AGCATCTTATAGTGTGAATAATATTTGTAAGATGGAAAAACACAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCTCAGCCTGCTCATCCTACTGCCAGAAGACATCAGTGGGCTGGATCAGCTGGAAA
AGGCCATCACCTATGAGAATCTGAGTGAGTGGACCAGTGCAGACATGATGGAATTGTATG
AGGTGGAGCTGCACCTTCCCAAGTTCAAACTGGAAGAGACTTATGATCTCAAGTCAACCC
TGAGCAGTATGGGAATGAGTGATGCCTTTAGCCAGAGCAAAGCTGATTTCTCAGGAATGT
CTCTGGAGAGAAACCTATTTCTGTCCAATGTTTTCCACAAGTCTTTTGTGGAAGTAAATG
AACAAGGTACAGAGGCTGCAGGAGGCACTGGGAGTGAGGTGAGTTTTCGAATTAAACTCC
CCTCCATTGAAATCAATGCAGATCACCCATTCCTCTTCTTCATCAGGCACAACAAAACCA
ACAGCATTCTTTTTTATGGGAGATTCTGCTCCCCCTAGACCCTGCATCTCTCTCCTCAAG
AGCATCTTATAGTGTGAATAATATTTGTAAGATGGAAAAACACAATTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               210-329, + strand, RNAz p=0.970713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-329, + strand, RNAz p=0.970713

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-527, gnl|bosTau2|chr4 (40304850-40304374)
               

               
               51-527, gnl|Hg17|chr18 (59753049-59753530)
               

               
               51-527, gnl|Mm7|chr1 (107446643-107447119)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-527, gnl|bosTau2|chr4 (40304850-40304374)
               

               
               51-527, gnl|Hg17|chr18 (59753049-59753530)
               

               
               51-527, gnl|Mm7|chr1 (107446643-107447119)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.573987)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	51-527, gnl\|bosTau2\|chr4 (40304850-40304374)
	51-527, gnl\|Hg17\|chr18 (59753049-59753530)
	51-527, gnl\|Mm7\|chr1 (107446643-107447119)