Non-Coding RNA Search

Ss1.1-rcbl0_020461.5

Sequence:


               
               TCTGTGCCTACCTAAAAAAGAAATCCAATGTTGCCTTTCTGAGGGATCTGTTCAGTGCAG
TACACTGTTCAGTGCTGTTGTCCAGCTAGATTGATCCAAGAAGGACTGAGAAAGCTTTGT
TATTTTTAACAAAATCCAGGTGCATCAATTTTTGATGCTTTTTACTGTTTTTTATCTACT
CTGTTTGTGTTCTTTCTGCTCAGAGTATTCAGGTTTGTCATGGACATCAGAAGTCTGAAT
TCCAGTCTTACCGACTTTATAGCCCATGGTTGAATTTTAAAGCTGTTTAGGTTTAACAAT
GAAGGAATTTTATTCTTTAGTCAAAACTGTTCTTATTTTTACTCTTGCTCAGGATTAGTA
TTTTTAAACATTTAGTTTAATATAAACACAACATAGACTTGTCAGAAGGAAAAAAAATTG
TCCTAATATTGATGTTAAGCTTTATGTAATGAGCATCATTCTCTTTTCTTAGATAAATTT
GAGACTAATTAAAGCCAAGGAAAAAGAGGTGCCTGTCTTTTGCCTTAATACAAAAACCAA
CTGCAGTCAATCCTATCAAAGATAAAGAACAAATGAAATAGTGTGAGCTCTAAAGGTCAC
ACACGTTGAATAAATAATTGAATATGTGCTTATCGTGAGACCCCGATCTTGGGTGTCATG
TGTTTAGTTGCTCTAAAACTGATGTTCACCTTTCTGTTAATTTCCTTCTGCCTTGAGATT
ACATGACAGAAGTGACCTGTGACTACTCAATACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGCCTACCTAAAAAAGAAATCCAATGTTGCCTTTCTGAGGGATCTGTTCAGTGCAG
TACACTGTTCAGTGCTGTTGTCCAGCTAGATTGATCCAAGAAGGACTGAGAAAGCTTTGT
TATTTTTAACAAAATCCAGGTGCATCAATTTTTGATGCTTTTTACTGTTTTTTATCTACT
CTGTTTGTGTTCTTTCTGCTCAGAGTATTCAGGTTTGTCATGGACATCAGAAGTCTGAAT
TCCAGTCTTACCGACTTTATAGCCCATGGTTGAATTTTAAAGCTGTTTAGGTTTAACAAT
GAAGGAATTTTATTCTTTAGTCAAAACTGTTCTTATTTTTACTCTTGCTCAGGATTAGTA
TTTTTAAACATTTAGTTTAATATAAACACAACATAGACTTGTCAGAAGGAAAAAAAATTG
TCCTAATATTGATGTTAAGCTTTATGTAATGAGCATCATTCTCTTTTCTTAGATAAATTT
GAGACTAATTAAAGCCAAGGAAAAAGAGGTGCCTGTCTTTTGCCTTAATACAAAAACCAA
CTGCAGTCAATCCTATCAAAGATAAAGAACAAATGAAATAGTGTGAGCTCTAAAGGTCAC
ACACGTTGAATAAATAATTGAATATGTGCTTATCGTGAGACCCCGATCTTGGGTGTCATG
TGTTTAGTTGCTCTAAAACTGATGTTCACCTTTCTGTTAATTTCCTTCTGCCTTGAGATT
ACATGACAGAAGTGACCTGTGACTACTCAATACTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-228, + strand, RNAz p=0.561672

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-228, + strand, RNAz p=0.561672

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000922, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000922, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr15 (22473434-22474187)
               

               
               1-756, gnl|Hg17|chr11 (14848243-14848879)
               

               
               1-756, gnl|Mm7|chr7 (110452789-110453444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr15 (22473434-22474187)
               

               
               1-756, gnl|Hg17|chr11 (14848243-14848879)
               

               
               1-756, gnl|Mm7|chr7 (110452789-110453444)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbl (0.344392)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	1-756, gnl\|bosTau2\|chr15 (22473434-22474187)
	1-756, gnl\|Hg17\|chr11 (14848243-14848879)
	1-756, gnl\|Mm7\|chr7 (110452789-110453444)

	cbl (0.344392)
	hea (0.204499)
	fbs (0.175346)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	kid (0.129735)
	thg (0.126791)
	ldo (0.0970026)