Non-Coding RNA Search

Ss1.1-rcbl0_020765.5

Sequence:


               
               TTTTTTTGGAGGATATATAAGCAGTTTCAGCTGCTTGAGGGAGTAATTTAAAGATTGATA
TAAAACTCAGAAATGTTACTCCCTTTGACCATTTATGTAAATACTAGTTATTTTTTGTTG
CCTTTCCTTTTCTGTCCTTTCACTGAAAAGTTGTTGGACTGTTTGTTGCTTTTAACTTTA
TTGTGCTCCGCAAACTAGAGATAAAAAATTAGCTGTTGCTTAGTAAATTTAGCCCAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTGGAGGATATATAAGCAGTTTCAGCTGCTTGAGGGAGTAATTTAAAGATTGATA
TAAAACTCAGAAATGTTACTCCCTTTGACCATTTATGTAAATACTAGTTATTTTTTGTTG
CCTTTCCTTTTCTGTCCTTTCACTGAAAAGTTGTTGGACTGTTTGTTGCTTTTAACTTTA
TTGTGCTCCGCAAACTAGAGATAAAAAATTAGCTGTTGCTTAGTAAATTTAGCCCAACTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-92, - strand, RNAz p=0.997049
               

               
               116-231, - strand, RNAz p=0.656456

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-92, - strand, RNAz p=0.997049
               

               
               116-231, - strand, RNAz p=0.656456

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-237, gnl|bosTau2|chr8 (14279384-14279132)
               

               
               2-237, gnl|canFam2|chr11 (38779121-38779696)
               

               
               2-237, gnl|dasNov1|scaffold_5189 (122976-122434)
               

               
               2-237, gnl|echTel1|scaffold_284471 (78112-78636)
               

               
               2-237, gnl|hg17|chr9 (15461433-15462013)
               

               
               2-237, gnl|Hg17|chr9 (15461696-15461445)
               

               
               2-237, gnl|loxAfr1|scaffold_1453 (79689-80234)
               

               
               2-237, gnl|mm7|chr4 (82866403-82866864)
               

               
               2-237, gnl|monDom2|scaffold_5 (99010297-99009782)
               

               
               2-237, gnl|oryCun1|scaffold_126211 (4002-4504)
               

               
               2-237, gnl|panTro1|chr11 (15672853-15673434)
               

               
               2-237, gnl|rheMac2|chr15 (61419037-61418458)
               

               
               2-237, gnl|rn3|chr5 (102316487-102316852)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-237, gnl|bosTau2|chr8 (14279384-14279132)
               

               
               2-237, gnl|canFam2|chr11 (38779121-38779696)
               

               
               2-237, gnl|dasNov1|scaffold_5189 (122976-122434)
               

               
               2-237, gnl|echTel1|scaffold_284471 (78112-78636)
               

               
               2-237, gnl|hg17|chr9 (15461433-15462013)
               

               
               2-237, gnl|Hg17|chr9 (15461696-15461445)
               

               
               2-237, gnl|loxAfr1|scaffold_1453 (79689-80234)
               

               
               2-237, gnl|mm7|chr4 (82866403-82866864)
               

               
               2-237, gnl|monDom2|scaffold_5 (99010297-99009782)
               

               
               2-237, gnl|oryCun1|scaffold_126211 (4002-4504)
               

               
               2-237, gnl|panTro1|chr11 (15672853-15673434)
               

               
               2-237, gnl|rheMac2|chr15 (61419037-61418458)
               

               
               2-237, gnl|rn3|chr5 (102316487-102316852)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	2-92, - strand, RNAz p=0.997049
	116-231, - strand, RNAz p=0.656456

	2-237, gnl\|bosTau2\|chr8 (14279384-14279132)
	2-237, gnl\|canFam2\|chr11 (38779121-38779696)
	2-237, gnl\|dasNov1\|scaffold_5189 (122976-122434)
	2-237, gnl\|echTel1\|scaffold_284471 (78112-78636)
	2-237, gnl\|hg17\|chr9 (15461433-15462013)
	2-237, gnl\|Hg17\|chr9 (15461696-15461445)
	2-237, gnl\|loxAfr1\|scaffold_1453 (79689-80234)
	2-237, gnl\|mm7\|chr4 (82866403-82866864)
	2-237, gnl\|monDom2\|scaffold_5 (99010297-99009782)
	2-237, gnl\|oryCun1\|scaffold_126211 (4002-4504)
	2-237, gnl\|panTro1\|chr11 (15672853-15673434)
	2-237, gnl\|rheMac2\|chr15 (61419037-61418458)
	2-237, gnl\|rn3\|chr5 (102316487-102316852)