Non-Coding RNA Search

Ss1.1-rcbl0_020866.5

Sequence:


               
               AAGGAGTAGAACAAGTGTATGCAGTAAGGAAGCAGCTAAGAGAATTTGTGGAAAGAGAAC
TATTCAAACCTGATGAGGTANCCTGAAAGACATAATTTATCCTTTTTTCCAACTGTAAAT
GATATAAAAAATCACATCCATGAGGTACAGAAATCCTTGAGAAATGGAGATAATGTATAT
AACTCAGAGATTATTCCAGCAACGCTTCAATGGACTACAGATAGTGGGAATATTCTCAGA
GAGACTGTGACAGTTACATTTGCAGAAGGAAATTCACCAGGGGAATCAATTTCCACCAAA
TTGGGAACAAATCAGACAAGAGGTTCTTTGTCTCCAGAGCCAGCTCACTTGCTCTCCTCA
CTTTCTTCATTTCAGCCAAAAATATTCACACAACTACAGGGTTTGCAGTTGCAGCCAAGA
TTCATGTCTCCTGATGGAACACCAGCTCTGATATCAGTAAATAACCACCCCACCTCCAGT
CCTTCAAGACTTTTGGATTCAGTAGGAAGTGCTATAATGAGTAATAATTCTCTACTGCTT
GGTCAAAGTCATAGCCTTCAAACAGATACATGCCTAACCCAAAACAATACTGTTGCCTCT
ACCATGGGTAGCCTTCCAGAACCAGATCAAAATCTGGTTGCAATGGATCAGCTGGTGGAA
GTTGCAGATGTTGAGGACACAGAGAATCTGGAAGGAAATGTTCATCAAATTCTGTTGGGA
AACGTGCAGGCCATTCCAATACAGATTGTAGACAGCCACCCAGCTCTTATTGAAGAAAAT
CCGGAAGGTACCGTTTCTTTGAACCAAGTTAAGCAAGAACCCAAAGAACCAGCATTGTCT
GTGGAAGCAAAAAAATTTGGACTGTAAGAAATTATCTGCTACATAAAGTATTGAAGCTTT
TCAGAATTTACAACTCTGGTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAGTAGAACAAGTGTATGCAGTAAGGAAGCAGCTAAGAGAATTTGTGGAAAGAGAAC
TATTCAAACCTGATGAGGTANCCTGAAAGACATAATTTATCCTTTTTTCCAACTGTAAAT
GATATAAAAAATCACATCCATGAGGTACAGAAATCCTTGAGAAATGGAGATAATGTATAT
AACTCAGAGATTATTCCAGCAACGCTTCAATGGACTACAGATAGTGGGAATATTCTCAGA
GAGACTGTGACAGTTACATTTGCAGAAGGAAATTCACCAGGGGAATCAATTTCCACCAAA
TTGGGAACAAATCAGACAAGAGGTTCTTTGTCTCCAGAGCCAGCTCACTTGCTCTCCTCA
CTTTCTTCATTTCAGCCAAAAATATTCACACAACTACAGGGTTTGCAGTTGCAGCCAAGA
TTCATGTCTCCTGATGGAACACCAGCTCTGATATCAGTAAATAACCACCCCACCTCCAGT
CCTTCAAGACTTTTGGATTCAGTAGGAAGTGCTATAATGAGTAATAATTCTCTACTGCTT
GGTCAAAGTCATAGCCTTCAAACAGATACATGCCTAACCCAAAACAATACTGTTGCCTCT
ACCATGGGTAGCCTTCCAGAACCAGATCAAAATCTGGTTGCAATGGATCAGCTGGTGGAA
GTTGCAGATGTTGAGGACACAGAGAATCTGGAAGGAAATGTTCATCAAATTCTGTTGGGA
AACGTGCAGGCCATTCCAATACAGATTGTAGACAGCCACCCAGCTCTTATTGAAGAAAAT
CCGGAAGGTACCGTTTCTTTGAACCAAGTTAAGCAAGAACCCAAAGAACCAGCATTGTCT
GTGGAAGCAAAAAAATTTGGACTGTAAGAAATTATCTGCTACATAAAGTATTGAAGCTTT
TCAGAATTTACAACTCTGGTGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836187|ref|XP_585960.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836187|ref|XP_585960.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-716, + strand, RNAz p=0.559776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-716, + strand, RNAz p=0.559776

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               39-204, gnl|bosTau2|chr2 (51287574-51287738)
               

               
               39-204, gnl|canFam2|chr37 (14834894-14835080)
               

               
               39-204, gnl|danRer3|chr9 (15759452-15759648)
               

               
               39-204, gnl|dasNov1|scaffold_33362 (6600-6786)
               

               
               39-204, gnl|echTel1|scaffold_224987 (2312-2128)
               

               
               39-204, gnl|galGal2|chr7 (12892280-12892467)
               

               
               39-204, gnl|hg17|chr2 (203664555-203664741)
               

               
               39-204, gnl|Hg17|chr2 (203664561-203664725)
               

               
               39-204, gnl|loxAfr1|scaffold_36210 (14885-15071)
               

               
               39-204, gnl|mm7|chr1 (60394921-60395107)
               

               
               39-204, gnl|Mm7|chr1 (60394927-60395091)
               

               
               39-204, gnl|monDom2|scaffold_39 (21382018-21381832)
               

               
               39-204, gnl|oryCun1|scaffold_179252 (12671-12485)
               

               
               39-204, gnl|panTro1|chr13 (93658783-93658969)
               

               
               39-204, gnl|rheMac2|chr12 (66846750-66846936)
               

               
               39-204, gnl|rn3|chr9 (58829988-58830174)
               

               
               39-204, gnl|xenTro1|scaffold_288 (251822-251995)
               


               
               398-781, gnl|bosTau2|chr2 (51296529-51296910)
               

               
               398-781, gnl|Hg17|chr2 (203672299-203672683)
               

               
               398-781, gnl|Mm7|chr1 (60398766-60399150)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-204, gnl|bosTau2|chr2 (51287574-51287738)
               

               
               39-204, gnl|canFam2|chr37 (14834894-14835080)
               

               
               39-204, gnl|danRer3|chr9 (15759452-15759648)
               

               
               39-204, gnl|dasNov1|scaffold_33362 (6600-6786)
               

               
               39-204, gnl|echTel1|scaffold_224987 (2312-2128)
               

               
               39-204, gnl|galGal2|chr7 (12892280-12892467)
               

               
               39-204, gnl|hg17|chr2 (203664555-203664741)
               

               
               39-204, gnl|Hg17|chr2 (203664561-203664725)
               

               
               39-204, gnl|loxAfr1|scaffold_36210 (14885-15071)
               

               
               39-204, gnl|mm7|chr1 (60394921-60395107)
               

               
               39-204, gnl|Mm7|chr1 (60394927-60395091)
               

               
               39-204, gnl|monDom2|scaffold_39 (21382018-21381832)
               

               
               39-204, gnl|oryCun1|scaffold_179252 (12671-12485)
               

               
               39-204, gnl|panTro1|chr13 (93658783-93658969)
               

               
               39-204, gnl|rheMac2|chr12 (66846750-66846936)
               

               
               39-204, gnl|rn3|chr9 (58829988-58830174)
               

               
               39-204, gnl|xenTro1|scaffold_288 (251822-251995)
               


               
               398-781, gnl|bosTau2|chr2 (51296529-51296910)
               

               
               398-781, gnl|Hg17|chr2 (203672299-203672683)
               

               
               398-781, gnl|Mm7|chr1 (60398766-60399150)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	39-204, gnl\|bosTau2\|chr2 (51287574-51287738)
	39-204, gnl\|canFam2\|chr37 (14834894-14835080)
	39-204, gnl\|danRer3\|chr9 (15759452-15759648)
	39-204, gnl\|dasNov1\|scaffold_33362 (6600-6786)
	39-204, gnl\|echTel1\|scaffold_224987 (2312-2128)
	39-204, gnl\|galGal2\|chr7 (12892280-12892467)
	39-204, gnl\|hg17\|chr2 (203664555-203664741)
	39-204, gnl\|Hg17\|chr2 (203664561-203664725)
	39-204, gnl\|loxAfr1\|scaffold_36210 (14885-15071)
	39-204, gnl\|mm7\|chr1 (60394921-60395107)
	39-204, gnl\|Mm7\|chr1 (60394927-60395091)
	39-204, gnl\|monDom2\|scaffold_39 (21382018-21381832)
	39-204, gnl\|oryCun1\|scaffold_179252 (12671-12485)
	39-204, gnl\|panTro1\|chr13 (93658783-93658969)
	39-204, gnl\|rheMac2\|chr12 (66846750-66846936)
	39-204, gnl\|rn3\|chr9 (58829988-58830174)
	39-204, gnl\|xenTro1\|scaffold_288 (251822-251995)

	398-781, gnl\|bosTau2\|chr2 (51296529-51296910)
	398-781, gnl\|Hg17\|chr2 (203672299-203672683)
	398-781, gnl\|Mm7\|chr1 (60398766-60399150)