Non-Coding RNA Search

Ss1.1-rcbl0_020978.5

Sequence:


               
               CGGTATTCCCCCGTCTAATGCGTTTTGGCGTTTCATTGTGGGCACTGCATGCTCAGTTAC
AGCCAGCAGCCATATTGAAGAATAGAAGTAAGATTTTTTTTTTCTTCTTTCCTCCAAGTT
GAAGCTGTCGGTGAAAAGTGTTGAAGAAGTTGCTAGACATTGAAAATTAGGTTTGAAGGA
GATGAAGGTTTGGGACGTGTCACCAAATTAGGGGGTGAAAGGGAGTTTGGGAATATTTAT
TGCAGAAGCCAGAGGTTGAATTATTGAAATACCACTTTTAGATAAACTCTTAAGGAAATT
ATCCTAGCTAAATATAACAGTCTGAGCATATAAAAGTTGAGAACATCAGCTTATTTGATG
ATAGGAACTATACGAAATTCCAGTGAATTTTAGAGTTTGTTGTGATAATCTTATAAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTATTCCCCCGTCTAATGCGTTTTGGCGTTTCATTGTGGGCACTGCATGCTCAGTTAC
AGCCAGCAGCCATATTGAAGAATAGAAGTAAGATTTTTTTTTTCTTCTTTCCTCCAAGTT
GAAGCTGTCGGTGAAAAGTGTTGAAGAAGTTGCTAGACATTGAAAATTAGGTTTGAAGGA
GATGAAGGTTTGGGACGTGTCACCAAATTAGGGGGTGAAAGGGAGTTTGGGAATATTTAT
TGCAGAAGCCAGAGGTTGAATTATTGAAATACCACTTTTAGATAAACTCTTAAGGAAATT
ATCCTAGCTAAATATAACAGTCTGAGCATATAAAAGTTGAGAACATCAGCTTATTTGATG
ATAGGAACTATACGAAATTCCAGTGAATTTTAGAGTTTGTTGTGATAATCTTATAAGATT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-301, gnl|bosTau2|chr5 (70873299-70873598)
               

               
               3-301, gnl|canFam2|chr10 (27344647-27344150)
               

               
               3-301, gnl|dasNov1|scaffold_62326 (4825-4351)
               

               
               3-301, gnl|echTel1|scaffold_277102 (786-1261)
               

               
               3-301, gnl|hg17|chr22 (39672722-39673145)
               

               
               3-301, gnl|Hg17|chr22 (39672905-39673161)
               

               
               3-301, gnl|loxAfr1|scaffold_39915 (350-830)
               

               
               3-301, gnl|mm7|chr15 (81551645-81552031)
               

               
               3-301, gnl|panTro1|chr23 (39931544-39931967)
               

               
               3-301, gnl|rheMac2|chr10 (84861727-84862154)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-301, gnl|bosTau2|chr5 (70873299-70873598)
               

               
               3-301, gnl|canFam2|chr10 (27344647-27344150)
               

               
               3-301, gnl|dasNov1|scaffold_62326 (4825-4351)
               

               
               3-301, gnl|echTel1|scaffold_277102 (786-1261)
               

               
               3-301, gnl|hg17|chr22 (39672722-39673145)
               

               
               3-301, gnl|Hg17|chr22 (39672905-39673161)
               

               
               3-301, gnl|loxAfr1|scaffold_39915 (350-830)
               

               
               3-301, gnl|mm7|chr15 (81551645-81552031)
               

               
               3-301, gnl|panTro1|chr23 (39931544-39931967)
               

               
               3-301, gnl|rheMac2|chr10 (84861727-84862154)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	3-301, gnl\|bosTau2\|chr5 (70873299-70873598)
	3-301, gnl\|canFam2\|chr10 (27344647-27344150)
	3-301, gnl\|dasNov1\|scaffold_62326 (4825-4351)
	3-301, gnl\|echTel1\|scaffold_277102 (786-1261)
	3-301, gnl\|hg17\|chr22 (39672722-39673145)
	3-301, gnl\|Hg17\|chr22 (39672905-39673161)
	3-301, gnl\|loxAfr1\|scaffold_39915 (350-830)
	3-301, gnl\|mm7\|chr15 (81551645-81552031)
	3-301, gnl\|panTro1\|chr23 (39931544-39931967)
	3-301, gnl\|rheMac2\|chr10 (84861727-84862154)