Non-Coding RNA Search

Ss1.1-rcbl0_020990.5

Sequence:


               
               TGGATCTGGAACCCGAGCTGCTGCTGCAGGAGGCCCGCGAGAACGTGGAGGCGGCGCAGA
GCTACCGGCGGGAGCTGGGCCATAGGCTGCAGGGACTGCAGGAGGCGCGGAGGCAGATCA
AAGAGAGTGCATCCCAGACAAGAGATGTCCTCAAACAGCATTTTAATGATTTAAAGGGAA
CCCTGGGGAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACGCCATTG
AACAGGAGACCATTAAGCCACTAGATGACTGCCAGAAGCTGATAGAGCATGGAGTTAACA
CTGCAGAGGACCTCGTCCAAGAAGGTGAGATCGCCATTCTGGGTGGTGTAGGAGAACAAA
ATGAAAAACTCTGGAACTTTACCAAAAAAGCCTCCCACATCCAGCTGGACAGCTTACCAG
AAGTGCCTTTACTGGTTGATGTGCCTTGTTTATCTGCCCAGTTGGATGATTCAATTCTTA
ACATAGTGAAAGACCACATTTTCAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGA
TAGAAGAATTAGTAGAAAAACCTGGAGGCATCATCGTACGATGGTGTAAGGTGGACGACG
ACTTTACAGCCCAAGATTACAGGCTCCAGTTCCGGAAATGTACTTCCAGTCACTTTGAGG
ATGTGTACGTGGGCTCGGAAACTGAGTTCATCGTGTTGCACATAGACCCCAACGTGGACT
ACCAGTTCCGGGTCTGCGCCCGAGGGGACGGCCGGCAGGAGTGGAGCCCTTGGAGCGTCC
CCCAGACAGGCCATTCCACGCTGGTGCCGCACGAGTGGACAGCTGGCTTCGAGGGGTACA
GTCTGAGCAGCCGAAGAAACATAGCGCTCCGCAACGATGCCGAGTCCTCGGGCGTCCTCT
ACTCCAGCGCCCCCACTTACTTCTGTGGGCAGACGCTGACCTTCAGGGTTGAAACTGTGG
GACAACCAGACAGAAGAGACAGTCTGGGAGTGTGTGCAGAAAAGCAGAATGGGTATGACT
CTCTGCAGCGGGATCAAGCCGTGTGCATTAGCACAAACGGTGCAGTTTTTGTAAATGGAA
AAGAAATGACTAATCAGTTGCCCGCAGTTACTTCTGGGTCCACTGTCACATTTGACATTG
AAGCTGTGACTCTAGGATCCACCAATAATAACGAAGGCGGAAACTTCAAGCTTCGAGTAA
CTATTAGCTCAAATAACAGAGAAGTGGTGTTTGATTGGTTGCTCGATCAGTCTTGTGGTT
CTCTTTACTTTGGATGCTCATTTTTCTACCCCGGGTGGAAAGTGTTGGTGTTCTAGATTT
TCCGACGATTGGTTTCGGTTTGCAGGGGTTTTGTAAAGCTGGCCTCAGTCCCATGTAGTT
GTCATTGATTTTAAAAATGGATAGATTCATCTCTCACTTAAGCCATCGGAAACAAATTAT
TTACTGGATTTATTTTAGACTGTCTTAGCAGTGAGAGGCTTGAATGTTGTGGATAAAACA
TCTTATTTTTAGCGTCGTGTTCATTGGAATATCCCATTACAATAAAAACCAAATTGCCTT
TTAAAGTGTGAGGAGATACAGAGCGCTCTCTGTGTACCCTTCCCCTGTATTTCTTTTTAA
AGTTGGTTATGGGAACAGGTAACGTAACATCGTTGTATTAAATCTCCATCTTTTAAAGAT
CCAAGACTCTAGAAAGAAACCGCAGGAAGAGACCAGGTAGGAGGTGGCTACCGTGTCCGC
TGTATTATACGCTCACTTGTGTGTTCTCCACAGGAGTGTTGAATTTGCTCTCCATATTCA
GGGATTTGTAAGCAGTATTGAATTTTAGCTCTTGGTCAGGAATCTTGAAGTCCCCAAAGC
ATGGTGATGTTTGCATTTTTAGAAATGACTGAGCAGATGTCTACAGTAGGCAGAGTCTTT
TCTTTTGTGCTTTCCTTGCAATTTGATTCATGATGGGCTAGAGGGTTTTGCCAGGGTTAA
ACTCCTTCTGGAGGAGGTATGCCCAGCGGTGTTAGCCATTTCCCGGCTGTGAAAGGTGCG
CAGGTGCGTCTCCCGCCTCAGCCGGGTGCGCGTTGCCCTTGGCAGGGGCTGAGCTGCAGT
CCTGTTTTACGTCAGTTTCGTAAGTGGTCTTTCCCTGGACCAAACACACAGAGGGTAACT
ACTTGACCTATTTTGGGGGAAACTTAAATTTGTTGAAAATATTTATTTGAAGGGCTTAAC
TTCGTATGTGAAAATGATTATCTGAACTTGCTATATACCAGCCTAAGATCTTTCTCTTTA
ATGTGAATGTTTTTTTTTTTTTTTTCATTTTTAACAGTAGAAAAGTGGAAAAGCAAGTTT
GATATTTTTGTAAGATAATTTATTGGGGGATTTCAGATTCCCTGTTAGACAATCATGACC
TTCCTCCCCTTGCCTTTTGATAAATACGTAAACTGTTTGTCACTTGTTTAGTGATTAAGA
AGATGTGCTAGAATTTAGATGCCTTGTCCAGCTGTCTGAAACCAAATAAAAAACTAAACG
TTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATCTGGAACCCGAGCTGCTGCTGCAGGAGGCCCGCGAGAACGTGGAGGCGGCGCAGA
GCTACCGGCGGGAGCTGGGCCATAGGCTGCAGGGACTGCAGGAGGCGCGGAGGCAGATCA
AAGAGAGTGCATCCCAGACAAGAGATGTCCTCAAACAGCATTTTAATGATTTAAAGGGAA
CCCTGGGGAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACGCCATTG
AACAGGAGACCATTAAGCCACTAGATGACTGCCAGAAGCTGATAGAGCATGGAGTTAACA
CTGCAGAGGACCTCGTCCAAGAAGGTGAGATCGCCATTCTGGGTGGTGTAGGAGAACAAA
ATGAAAAACTCTGGAACTTTACCAAAAAAGCCTCCCACATCCAGCTGGACAGCTTACCAG
AAGTGCCTTTACTGGTTGATGTGCCTTGTTTATCTGCCCAGTTGGATGATTCAATTCTTA
ACATAGTGAAAGACCACATTTTCAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGA
TAGAAGAATTAGTAGAAAAACCTGGAGGCATCATCGTACGATGGTGTAAGGTGGACGACG
ACTTTACAGCCCAAGATTACAGGCTCCAGTTCCGGAAATGTACTTCCAGTCACTTTGAGG
ATGTGTACGTGGGCTCGGAAACTGAGTTCATCGTGTTGCACATAGACCCCAACGTGGACT
ACCAGTTCCGGGTCTGCGCCCGAGGGGACGGCCGGCAGGAGTGGAGCCCTTGGAGCGTCC
CCCAGACAGGCCATTCCACGCTGGTGCCGCACGAGTGGACAGCTGGCTTCGAGGGGTACA
GTCTGAGCAGCCGAAGAAACATAGCGCTCCGCAACGATGCCGAGTCCTCGGGCGTCCTCT
ACTCCAGCGCCCCCACTTACTTCTGTGGGCAGACGCTGACCTTCAGGGTTGAAACTGTGG
GACAACCAGACAGAAGAGACAGTCTGGGAGTGTGTGCAGAAAAGCAGAATGGGTATGACT
CTCTGCAGCGGGATCAAGCCGTGTGCATTAGCACAAACGGTGCAGTTTTTGTAAATGGAA
AAGAAATGACTAATCAGTTGCCCGCAGTTACTTCTGGGTCCACTGTCACATTTGACATTG
AAGCTGTGACTCTAGGATCCACCAATAATAACGAAGGCGGAAACTTCAAGCTTCGAGTAA
CTATTAGCTCAAATAACAGAGAAGTGGTGTTTGATTGGTTGCTCGATCAGTCTTGTGGTT
CTCTTTACTTTGGATGCTCATTTTTCTACCCCGGGTGGAAAGTGTTGGTGTTCTAGATTT
TCCGACGATTGGTTTCGGTTTGCAGGGGTTTTGTAAAGCTGGCCTCAGTCCCATGTAGTT
GTCATTGATTTTAAAAATGGATAGATTCATCTCTCACTTAAGCCATCGGAAACAAATTAT
TTACTGGATTTATTTTAGACTGTCTTAGCAGTGAGAGGCTTGAATGTTGTGGATAAAACA
TCTTATTTTTAGCGTCGTGTTCATTGGAATATCCCATTACAATAAAAACCAAATTGCCTT
TTAAAGTGTGAGGAGATACAGAGCGCTCTCTGTGTACCCTTCCCCTGTATTTCTTTTTAA
AGTTGGTTATGGGAACAGGTAACGTAACATCGTTGTATTAAATCTCCATCTTTTAAAGAT
CCAAGACTCTAGAAAGAAACCGCAGGAAGAGACCAGGTAGGAGGTGGCTACCGTGTCCGC
TGTATTATACGCTCACTTGTGTGTTCTCCACAGGAGTGTTGAATTTGCTCTCCATATTCA
GGGATTTGTAAGCAGTATTGAATTTTAGCTCTTGGTCAGGAATCTTGAAGTCCCCAAAGC
ATGGTGATGTTTGCATTTTTAGAAATGACTGAGCAGATGTCTACAGTAGGCAGAGTCTTT
TCTTTTGTGCTTTCCTTGCAATTTGATTCATGATGGGCTAGAGGGTTTTGCCAGGGTTAA
ACTCCTTCTGGAGGAGGTATGCCCAGCGGTGTTAGCCATTTCCCGGCTGTGAAAGGTGCG
CAGGTGCGTCTCCCGCCTCAGCCGGGTGCGCGTTGCCCTTGGCAGGGGCTGAGCTGCAGT
CCTGTTTTACGTCAGTTTCGTAAGTGGTCTTTCCCTGGACCAAACACACAGAGGGTAACT
ACTTGACCTATTTTGGGGGAAACTTAAATTTGTTGAAAATATTTATTTGAAGGGCTTAAC
TTCGTATGTGAAAATGATTATCTGAACTTGCTATATACCAGCCTAAGATCTTTCTCTTTA
ATGTGAATGTTTTTTTTTTTTTTTTCATTTTTAACAGTAGAAAAGTGGAAAAGCAAGTTT
GATATTTTTGTAAGATAATTTATTGGGGGATTTCAGATTCCCTGTTAGACAATCATGACC
TTCCTCCCCTTGCCTTTTGATAAATACGTAAACTGTTTGTCACTTGTTTAGTGATTAAGA
AGATGTGCTAGAATTTAGATGCCTTGTCCAGCTGTCTGAAACCAAATAAAAAACTAAACG
TTAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816808|ref|XP_597197.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816808|ref|XP_597197.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               426-545, - strand, RNAz p=0.890139
               

               
               1045-1148, - strand, RNAz p=0.5122

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-545, - strand, RNAz p=0.890139
               

               
               1045-1148, - strand, RNAz p=0.5122

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               187-1567, gnl|bosTau2|chr11 (37366390-37367751)
               

               
               187-1567, gnl|Hg17|chr2 (84170199-84171403)
               


               
               1603-1960, gnl|bosTau2|chr11 (37367910-37368274)
               

               
               1603-1960, gnl|Hg17|chr2 (84171433-84171772)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-1567, gnl|bosTau2|chr11 (37366390-37367751)
               

               
               187-1567, gnl|Hg17|chr2 (84170199-84171403)
               


               
               1603-1960, gnl|bosTau2|chr11 (37367910-37368274)
               

               
               1603-1960, gnl|Hg17|chr2 (84171433-84171772)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbl (0.803582)
               

               
               fty (0.527519)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.803582)
               

               
               fty (0.527519)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	426-545, - strand, RNAz p=0.890139
	1045-1148, - strand, RNAz p=0.5122

	187-1567, gnl\|bosTau2\|chr11 (37366390-37367751)
	187-1567, gnl\|Hg17\|chr2 (84170199-84171403)

	1603-1960, gnl\|bosTau2\|chr11 (37367910-37368274)
	1603-1960, gnl\|Hg17\|chr2 (84171433-84171772)

	cbl (0.803582)
	fty (0.527519)
	hyp (0.285673)
	fli (0.202881)
	nlu (0.191681)
	sag (0.182715)
	duo (0.172801)
	mga (0.160205)
	spl (0.143184)
	pla (0.133672)
	ute (0.132784)
	thg (0.126791)
	cty (0.10408)
	nbm (0.0993246)