Non-Coding RNA Search

Ss1.1-rcbl0_021204.5.5

Sequence:


               
               TTTCTTACCTAAATTTCAGGATGATATCTTTTTGATGTCAAAAAGCAAAAGCATTTTATA
TCTCATTAGCCAGGCTTTTTAGGAACAGAGTTTGTTTATTTGTGGCAGGGTGAAAAATAG
ACAATTTGACTGTTTATTTGTGGCAGGGTGAAACATATACAAACTACCCCTATTTATGGT
TATATCTCTCTCTGTATGCACAGGTTATGGGAAGTGTAGAGATATAGGCAAAGATAAGAT
GGTAAGTAGACAGTCTGAAAGTGTTGCTCCATACTGAAGGAATGTTCTGGAAATTTGCAT
TTCGCTCCTTTTTTCCACGTGAGGGGGTCTCACTACAGGGAGGTGGCCGAGGAACAGCAC
TTCTCAGGGGCCGCCAGTTCGCATGTCCCCCTCGAAAGGCTCTACTTTTGTCAACCAAAC
CATTGGGTTGCCCAACTGTGATGGAAAAACACAAGCAGATGTTGGCCCGGAACTCCACGT
CCTTGTTGGCGCAGTGAGGCTTATGTTACACACCACTGAACGTGACCCGTTTCAAGTTGA
TTTTTGGAGACACGTGAATTAGCATGGCTTTAACTTCACCCAGCACAAAAGAGAAATGGA
GTTGAAACTGAATTCTTTGAATTCTAAGTCCCTTTTCACTACAAGACTGTCCAAAAATAT
CGGTGTACCTTTTTCTTGTTTACTCATCCGCCCACCATGTTTTCCTGTCAGTCCCAATTC
TGGCAAATCTGCAATCCTGTGATGCTGGTAACTTAGAATAACTCATGATCATTACTGTTT
TGAAGGAAAAGAGATTCTGAGTTCTCTTATGGTTCAGATCAAGTAATGGATGTTGCTTTA
CATCTAATTAAGAGAAGAAAAGTCAGTGAAGGAAGCCTCTGATCATATTGATCACAATAG
AAGCAAAAGCCAAATCAATCCCCTTCATTATCAGTATTCCTCATGCTGTACACAGTAAAC
TTGTTAGACTGAGTACTTGGTTTTTGTTTAATAGAACAAATAATCAGTGTTTTCCTTCTA
TTACTAAATGTGAAAAACACATAATGTGAAAAGTATACATACATTAACTTGGTTGTAAAA
CTCATTTAAGTGTTCATGTAACGTGGTAAGTTGAAAAAAGTGAAGTGAGCTATTTTACTG
CAATGAATTCGTTTGACTCAAAGATTAAAATGCCCCCACCCCCACTCCACGTGTATCTCT
TCTGGCCTGTAACAATTGAAAGCAATGTTTTTGCAGTTTATATAATGCAGTTTTTACATC
TGTGTTTAAAAATGGAGTTCCTATGGGCTTAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTACCTAAATTTCAGGATGATATCTTTTTGATGTCAAAAAGCAAAAGCATTTTATA
TCTCATTAGCCAGGCTTTTTAGGAACAGAGTTTGTTTATTTGTGGCAGGGTGAAAAATAG
ACAATTTGACTGTTTATTTGTGGCAGGGTGAAACATATACAAACTACCCCTATTTATGGT
TATATCTCTCTCTGTATGCACAGGTTATGGGAAGTGTAGAGATATAGGCAAAGATAAGAT
GGTAAGTAGACAGTCTGAAAGTGTTGCTCCATACTGAAGGAATGTTCTGGAAATTTGCAT
TTCGCTCCTTTTTTCCACGTGAGGGGGTCTCACTACAGGGAGGTGGCCGAGGAACAGCAC
TTCTCAGGGGCCGCCAGTTCGCATGTCCCCCTCGAAAGGCTCTACTTTTGTCAACCAAAC
CATTGGGTTGCCCAACTGTGATGGAAAAACACAAGCAGATGTTGGCCCGGAACTCCACGT
CCTTGTTGGCGCAGTGAGGCTTATGTTACACACCACTGAACGTGACCCGTTTCAAGTTGA
TTTTTGGAGACACGTGAATTAGCATGGCTTTAACTTCACCCAGCACAAAAGAGAAATGGA
GTTGAAACTGAATTCTTTGAATTCTAAGTCCCTTTTCACTACAAGACTGTCCAAAAATAT
CGGTGTACCTTTTTCTTGTTTACTCATCCGCCCACCATGTTTTCCTGTCAGTCCCAATTC
TGGCAAATCTGCAATCCTGTGATGCTGGTAACTTAGAATAACTCATGATCATTACTGTTT
TGAAGGAAAAGAGATTCTGAGTTCTCTTATGGTTCAGATCAAGTAATGGATGTTGCTTTA
CATCTAATTAAGAGAAGAAAAGTCAGTGAAGGAAGCCTCTGATCATATTGATCACAATAG
AAGCAAAAGCCAAATCAATCCCCTTCATTATCAGTATTCCTCATGCTGTACACAGTAAAC
TTGTTAGACTGAGTACTTGGTTTTTGTTTAATAGAACAAATAATCAGTGTTTTCCTTCTA
TTACTAAATGTGAAAAACACATAATGTGAAAAGTATACATACATTAACTTGGTTGTAAAA
CTCATTTAAGTGTTCATGTAACGTGGTAAGTTGAAAAAAGTGAAGTGAGCTATTTTACTG
CAATGAATTCGTTTGACTCAAAGATTAAAATGCCCCCACCCCCACTCCACGTGTATCTCT
TCTGGCCTGTAACAATTGAAAGCAATGTTTTTGCAGTTTATATAATGCAGTTTTTACATC
TGTGTTTAAAAATGGAGTTCCTATGGGCTTAACACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               311-424, - strand, RNAz p=0.810186
               

               
               886-1005, + strand, RNAz p=0.575538

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-424, - strand, RNAz p=0.810186
               

               
               886-1005, + strand, RNAz p=0.575538

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1296, gnl|bosTau2|chr14 (19760418-19761681)
               

               
               1-1296, gnl|Hg17|chr8 (71186705-71185426)
               

               
               1-1296, gnl|Mm7|chr1 (13287456-13286291)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1296, gnl|bosTau2|chr14 (19760418-19761681)
               

               
               1-1296, gnl|Hg17|chr8 (71186705-71185426)
               

               
               1-1296, gnl|Mm7|chr1 (13287456-13286291)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (1.03318)
               

               
               liv (0.292569)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               liv (0.292569)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	311-424, - strand, RNAz p=0.810186
	886-1005, + strand, RNAz p=0.575538

	1-1296, gnl\|bosTau2\|chr14 (19760418-19761681)
	1-1296, gnl\|Hg17\|chr8 (71186705-71185426)
	1-1296, gnl\|Mm7\|chr1 (13287456-13286291)

	cbl (1.03318)
	liv (0.292569)
	cki (0.165235)
	tbr (0.154178)
	lin (0.145603)
	kid (0.129735)
	ecc (0.115035)