Non-Coding RNA Search

Ss1.1-rcbl0_021771.5

Sequence:


               
               CAGTATGAGCCGGCCCATCTGGCTCCTCTGAGGGAGGACTCGGTCCTGAGGGAGCTGGAG
CGGGAGGACAAAGCCAGCGACGATGAGCTGATGACCCCCGAGAGCGAGCGCGTGCAGGTG
GAGGGCGGCATGGAGAGCAGCCTGCTGCCCTACGTCTCCAACATCCTGAGCCCGGCCGGC
CAGATCTTCATGTGCCCCCTGTGCAACAAGGTCTTCCCCAGCCCGCACATCCTGCAGCTG
CACCTGAGCACGCACTTCCGCGAGCAGGACGGCCTGCGCAGCAAGCCGGCCGCCGACGTC
AACGTGCCCACCTGCTCGCTGTGCGGGAAGACGTTCTCCTGCATGTACACCCTGAAGCGC
CACGAGAGGACTCACTCGGGCGAGAAGCCCTACACGTGCACGCAGTGCGGCAAGAGCTTC
CAGTACTCGCACAACCTGAGCCGCCACGCCGTGGTGCACACGCGCGAGAAGCCGCACGCC
TGCAAGTGGTGCGAGCGCAGGTTCACGCAGTCCGGGGACCTGTACCGGCACATCCGCAAG
TTCCACTGTGAGTTGGTGAACTCCTTGTCGGTCAAAAGCGAGGCGCTGAGCCTGCCCGCT
GTCAGAGACTGGACCTTAGAAGATAGCCCTCAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATGAGCCGGCCCATCTGGCTCCTCTGAGGGAGGACTCGGTCCTGAGGGAGCTGGAG
CGGGAGGACAAAGCCAGCGACGATGAGCTGATGACCCCCGAGAGCGAGCGCGTGCAGGTG
GAGGGCGGCATGGAGAGCAGCCTGCTGCCCTACGTCTCCAACATCCTGAGCCCGGCCGGC
CAGATCTTCATGTGCCCCCTGTGCAACAAGGTCTTCCCCAGCCCGCACATCCTGCAGCTG
CACCTGAGCACGCACTTCCGCGAGCAGGACGGCCTGCGCAGCAAGCCGGCCGCCGACGTC
AACGTGCCCACCTGCTCGCTGTGCGGGAAGACGTTCTCCTGCATGTACACCCTGAAGCGC
CACGAGAGGACTCACTCGGGCGAGAAGCCCTACACGTGCACGCAGTGCGGCAAGAGCTTC
CAGTACTCGCACAACCTGAGCCGCCACGCCGTGGTGCACACGCGCGAGAAGCCGCACGCC
TGCAAGTGGTGCGAGCGCAGGTTCACGCAGTCCGGGGACCTGTACCGGCACATCCGCAAG
TTCCACTGTGAGTTGGTGAACTCCTTGTCGGTCAAAAGCGAGGCGCTGAGCCTGCCCGCT
GTCAGAGACTGGACCTTAGAAGATAGCCCTCAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26354022|dbj|BAC40641.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26354022|dbj|BAC40641.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               167-572, gnl|bosTau2|chr21 (48930382-48929977)
               

               
               167-572, gnl|Hg17|chr14 (104339439-104339844)
               

               
               167-572, gnl|Mm7|chr12 (110205194-110205596)
               


               
               322-538, gnl|bosTau2|chr17 (45350802-45350586)
               

               
               322-538, gnl|Hg17|chr22 (20125350-20125566)
               

               
               322-538, gnl|Mm7|chr16 (16808665-16808881)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-572, gnl|bosTau2|chr21 (48930382-48929977)
               

               
               167-572, gnl|Hg17|chr14 (104339439-104339844)
               

               
               167-572, gnl|Mm7|chr12 (110205194-110205596)
               


               
               322-538, gnl|bosTau2|chr17 (45350802-45350586)
               

               
               322-538, gnl|Hg17|chr22 (20125350-20125566)
               

               
               322-538, gnl|Mm7|chr16 (16808665-16808881)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.229595)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               ecc (0.115035)

	167-572, gnl\|bosTau2\|chr21 (48930382-48929977)
	167-572, gnl\|Hg17\|chr14 (104339439-104339844)
	167-572, gnl\|Mm7\|chr12 (110205194-110205596)

	322-538, gnl\|bosTau2\|chr17 (45350802-45350586)
	322-538, gnl\|Hg17\|chr22 (20125350-20125566)
	322-538, gnl\|Mm7\|chr16 (16808665-16808881)