Non-Coding RNA Search

Ss1.1-rcbl0_022053.5

Sequence:


               
               GTTTACCACCATGGAAGAGAAGGAAATAGAATGAATGGAAGTAGAACTCTAACGCACAGC
ATTAGTGATGGACAGCTTCAAGGTGGTCAGTCCAATAATGAACTATTTCAGCAGGAGCCA
CAGACAGCACCAGCTCAAGTTCCTCAAGGCTTTAATGTTTTGGGAATGTCTAGTACATCA
GGTGCTTCAAATTCAGCACCACATCTTGGATTTCACTTAGGCAGCAAAGGAACATCTAAC
CTTTCTCAACAAACTCCCAGGTTTAATCCCATTATGGTAACTTTAGCCCCAAATATCCAG
ACTGGTCGTAATACTCCCACATCTTTGCACATACATGGTGTACCTCCACCTGTACTTAAC
AGTCCACAGGGAAACTCTATCTATATTAGGCCCTACATTACAACTCCTAGTGGTACGGCT
CGACAGACACAACAGCATTCTGGCTGGGTATCTCAGTTTAATCCCATGAACCCTCAACAA
GTTTATCAACCTTCACAACCTGGTCCCTGGACTACATATCCTGCATCTAATCCTCTGCCA
CATACCTCAGCCCAGCAGCCAAATCAGCAAGGCCACCAGACCTCTCATGTCTACATGCCC
ATCAGTTCACCTACTACTCCACAACCACCAACAATTCATTCGTCTGGTAGCTCACAGTCT
TCTGCCCATAGCCAATATAACATTCAGAATATTTCAACAGGACCTCGAAAAAACCAGATT
GAAATTAAACTTGAACCCCCACAAAGAAACAGTTCTTCAAAATTGCGTTCTTCTGGACCT
CGAACCTCCAGCAGTTCTTCGGTCAACAGCCAGACCTTAAATAGAAATCAGCCCACTGTT
TACATAGCTGCCAGTCCCCCAAATACTGATGAGGTGATGTCCCGTAGTCAACCTAAGGTC
TATATTTCTGCTAATGCCACCACAGGAGATGAGCAGGTCATACGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTACCACCATGGAAGAGAAGGAAATAGAATGAATGGAAGTAGAACTCTAACGCACAGC
ATTAGTGATGGACAGCTTCAAGGTGGTCAGTCCAATAATGAACTATTTCAGCAGGAGCCA
CAGACAGCACCAGCTCAAGTTCCTCAAGGCTTTAATGTTTTGGGAATGTCTAGTACATCA
GGTGCTTCAAATTCAGCACCACATCTTGGATTTCACTTAGGCAGCAAAGGAACATCTAAC
CTTTCTCAACAAACTCCCAGGTTTAATCCCATTATGGTAACTTTAGCCCCAAATATCCAG
ACTGGTCGTAATACTCCCACATCTTTGCACATACATGGTGTACCTCCACCTGTACTTAAC
AGTCCACAGGGAAACTCTATCTATATTAGGCCCTACATTACAACTCCTAGTGGTACGGCT
CGACAGACACAACAGCATTCTGGCTGGGTATCTCAGTTTAATCCCATGAACCCTCAACAA
GTTTATCAACCTTCACAACCTGGTCCCTGGACTACATATCCTGCATCTAATCCTCTGCCA
CATACCTCAGCCCAGCAGCCAAATCAGCAAGGCCACCAGACCTCTCATGTCTACATGCCC
ATCAGTTCACCTACTACTCCACAACCACCAACAATTCATTCGTCTGGTAGCTCACAGTCT
TCTGCCCATAGCCAATATAACATTCAGAATATTTCAACAGGACCTCGAAAAAACCAGATT
GAAATTAAACTTGAACCCCCACAAAGAAACAGTTCTTCAAAATTGCGTTCTTCTGGACCT
CGAACCTCCAGCAGTTCTTCGGTCAACAGCCAGACCTTAAATAGAAATCAGCCCACTGTT
TACATAGCTGCCAGTCCCCCAAATACTGATGAGGTGATGTCCCGTAGTCAACCTAAGGTC
TATATTTCTGCTAATGCCACCACAGGAGATGAGCAGGTCATACGGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627538|ref|XP_518792.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627538|ref|XP_518792.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               502-616, - strand, RNAz p=0.571229
               

               
               737-853, - strand, RNAz p=0.901247

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               502-616, - strand, RNAz p=0.571229
               

               
               737-853, - strand, RNAz p=0.901247

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-948, gnl|bosTau2|chr23 (25075833-25076783)
               

               
               1-948, gnl|canFam2|chr1 (43219979-43220724)
               

               
               1-948, gnl|danRer3|chr20 (1746284-1746931)
               

               
               1-948, gnl|dasNov1|scaffold_16283 (2611-1866)
               

               
               1-948, gnl|echTel1|scaffold_296111 (38182-38927)
               

               
               1-948, gnl|fr1|chrUn (270652491-270653237)
               

               
               1-948, gnl|galGal2|chr3 (47037022-47037774)
               

               
               1-948, gnl|hg17|chr6 (149740830-149741576)
               

               
               1-948, gnl|Hg17|chr6 (149741003-149741953)
               

               
               1-948, gnl|mm7|chr10 (7620880-7620135)
               

               
               1-948, gnl|Mm7|chr10 (7620706-7619756)
               

               
               1-948, gnl|monDom2|scaffold_0 (56661364-56660619)
               

               
               1-948, gnl|oryCun1|scaffold_214483 (10794-10050)
               

               
               1-948, gnl|panTro1|chr5 (153196453-153197199)
               

               
               1-948, gnl|rheMac2|chr4 (113917203-113916457)
               

               
               1-948, gnl|rn3|chr1 (2583124-2582379)
               

               
               1-948, gnl|tetNig1|chrUn_random (83821139-83821893)
               

               
               1-948, gnl|xenTro1|scaffold_986 (119638-120380)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr23 (25075833-25076783)
               

               
               1-948, gnl|canFam2|chr1 (43219979-43220724)
               

               
               1-948, gnl|danRer3|chr20 (1746284-1746931)
               

               
               1-948, gnl|dasNov1|scaffold_16283 (2611-1866)
               

               
               1-948, gnl|echTel1|scaffold_296111 (38182-38927)
               

               
               1-948, gnl|fr1|chrUn (270652491-270653237)
               

               
               1-948, gnl|galGal2|chr3 (47037022-47037774)
               

               
               1-948, gnl|hg17|chr6 (149740830-149741576)
               

               
               1-948, gnl|Hg17|chr6 (149741003-149741953)
               

               
               1-948, gnl|mm7|chr10 (7620880-7620135)
               

               
               1-948, gnl|Mm7|chr10 (7620706-7619756)
               

               
               1-948, gnl|monDom2|scaffold_0 (56661364-56660619)
               

               
               1-948, gnl|oryCun1|scaffold_214483 (10794-10050)
               

               
               1-948, gnl|panTro1|chr5 (153196453-153197199)
               

               
               1-948, gnl|rheMac2|chr4 (113917203-113916457)
               

               
               1-948, gnl|rn3|chr1 (2583124-2582379)
               

               
               1-948, gnl|tetNig1|chrUn_random (83821139-83821893)
               

               
               1-948, gnl|xenTro1|scaffold_986 (119638-120380)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               nmm (0.132802)

	502-616, - strand, RNAz p=0.571229
	737-853, - strand, RNAz p=0.901247

	1-948, gnl\|bosTau2\|chr23 (25075833-25076783)
	1-948, gnl\|canFam2\|chr1 (43219979-43220724)
	1-948, gnl\|danRer3\|chr20 (1746284-1746931)
	1-948, gnl\|dasNov1\|scaffold_16283 (2611-1866)
	1-948, gnl\|echTel1\|scaffold_296111 (38182-38927)
	1-948, gnl\|fr1\|chrUn (270652491-270653237)
	1-948, gnl\|galGal2\|chr3 (47037022-47037774)
	1-948, gnl\|hg17\|chr6 (149740830-149741576)
	1-948, gnl\|Hg17\|chr6 (149741003-149741953)
	1-948, gnl\|mm7\|chr10 (7620880-7620135)
	1-948, gnl\|Mm7\|chr10 (7620706-7619756)
	1-948, gnl\|monDom2\|scaffold_0 (56661364-56660619)
	1-948, gnl\|oryCun1\|scaffold_214483 (10794-10050)
	1-948, gnl\|panTro1\|chr5 (153196453-153197199)
	1-948, gnl\|rheMac2\|chr4 (113917203-113916457)
	1-948, gnl\|rn3\|chr1 (2583124-2582379)
	1-948, gnl\|tetNig1\|chrUn_random (83821139-83821893)
	1-948, gnl\|xenTro1\|scaffold_986 (119638-120380)