Non-Coding RNA Search

Ss1.1-rcbl0_022105.5

Sequence:


               
               GTACTTGGGTTGCTAGGGATAAATAAGTTTCTGAAGATTTTCACTGCGGAATTGCAGAAT
TTTGGGGGCGTGTGTTGGCCAGGAGGGACTCAGAGGTTTTAGTCACTTCACCTGAAGGAA
CTAGTTTCCCTGATGAGCCCGACCTTTTTGTGAATGCGTGAACCTCAGGGCTTTTGGTAA
GAGTACGCCTGAGAAAGCCGGTCTGCGCTCTTCCTCCGTGGCCACCTTAGAGATGAACTG
ATGCCTTAGTGGTTTATCATGGCCCAGCGGGCAGTGTGGCTTATAAGCCACGAACCAGGA
ACTTCACCATGTGGCACCATCAAATTCTCCAGGCGATATCCAACTGTTGAAAAAAGAGCC
AAAGTCTTCAATGGAGCAAGTTATGTGCCTGTTCCTGAAGATGGTCCCTTCCTTAAAGCA
CTGCTTTTTGAACTGAGATTATTGGATGATGATAAAGACTTTGCAGAGAGTCGTGATAGC
TGTTCACACATCAGAAAAACATCCATTTATGGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTTGGGTTGCTAGGGATAAATAAGTTTCTGAAGATTTTCACTGCGGAATTGCAGAAT
TTTGGGGGCGTGTGTTGGCCAGGAGGGACTCAGAGGTTTTAGTCACTTCACCTGAAGGAA
CTAGTTTCCCTGATGAGCCCGACCTTTTTGTGAATGCGTGAACCTCAGGGCTTTTGGTAA
GAGTACGCCTGAGAAAGCCGGTCTGCGCTCTTCCTCCGTGGCCACCTTAGAGATGAACTG
ATGCCTTAGTGGTTTATCATGGCCCAGCGGGCAGTGTGGCTTATAAGCCACGAACCAGGA
ACTTCACCATGTGGCACCATCAAATTCTCCAGGCGATATCCAACTGTTGAAAAAAGAGCC
AAAGTCTTCAATGGAGCAAGTTATGTGCCTGTTCCTGAAGATGGTCCCTTCCTTAAAGCA
CTGCTTTTTGAACTGAGATTATTGGATGATGATAAAGACTTTGCAGAGAGTCGTGATAGC
TGTTCACACATCAGAAAAACATCCATTTATGGACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               221-333, - strand, RNAz p=0.938192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-333, - strand, RNAz p=0.938192

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               23-333, gnl|bosTau2|chr10 (46457426-46457123)
               

               
               23-333, gnl|canFam2|chr8 (35879029-35879435)
               

               
               23-333, gnl|dasNov1|scaffold_23703 (18473-18868)
               

               
               23-333, gnl|echTel1|scaffold_305762 (2792-3183)
               

               
               23-333, gnl|hg17|chr14 (56805387-56805784)
               

               
               23-333, gnl|Hg17|chr14 (56805541-56805860)
               

               
               23-333, gnl|loxAfr1|scaffold_19652 (35483-35894)
               

               
               23-333, gnl|mm7|chr14 (44398156-44398519)
               

               
               23-333, gnl|Mm7|chr14 (44398282-44398595)
               

               
               23-333, gnl|monDom2|scaffold_8 (69241028-69241489)
               

               
               23-333, gnl|panTro1|chr15 (56258744-56259141)
               

               
               23-333, gnl|rheMac2|chr7 (120281006-120281384)
               

               
               23-333, gnl|rn3|chr15 (25068844-25069207)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-333, gnl|bosTau2|chr10 (46457426-46457123)
               

               
               23-333, gnl|canFam2|chr8 (35879029-35879435)
               

               
               23-333, gnl|dasNov1|scaffold_23703 (18473-18868)
               

               
               23-333, gnl|echTel1|scaffold_305762 (2792-3183)
               

               
               23-333, gnl|hg17|chr14 (56805387-56805784)
               

               
               23-333, gnl|Hg17|chr14 (56805541-56805860)
               

               
               23-333, gnl|loxAfr1|scaffold_19652 (35483-35894)
               

               
               23-333, gnl|mm7|chr14 (44398156-44398519)
               

               
               23-333, gnl|Mm7|chr14 (44398282-44398595)
               

               
               23-333, gnl|monDom2|scaffold_8 (69241028-69241489)
               

               
               23-333, gnl|panTro1|chr15 (56258744-56259141)
               

               
               23-333, gnl|rheMac2|chr7 (120281006-120281384)
               

               
               23-333, gnl|rn3|chr15 (25068844-25069207)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	23-333, gnl\|bosTau2\|chr10 (46457426-46457123)
	23-333, gnl\|canFam2\|chr8 (35879029-35879435)
	23-333, gnl\|dasNov1\|scaffold_23703 (18473-18868)
	23-333, gnl\|echTel1\|scaffold_305762 (2792-3183)
	23-333, gnl\|hg17\|chr14 (56805387-56805784)
	23-333, gnl\|Hg17\|chr14 (56805541-56805860)
	23-333, gnl\|loxAfr1\|scaffold_19652 (35483-35894)
	23-333, gnl\|mm7\|chr14 (44398156-44398519)
	23-333, gnl\|Mm7\|chr14 (44398282-44398595)
	23-333, gnl\|monDom2\|scaffold_8 (69241028-69241489)
	23-333, gnl\|panTro1\|chr15 (56258744-56259141)
	23-333, gnl\|rheMac2\|chr7 (120281006-120281384)
	23-333, gnl\|rn3\|chr15 (25068844-25069207)