Non-Coding RNA Search

Ss1.1-rcbl0_022228.5

Sequence:


               
               GGCCTCGTCAGCTGGCACAGACATCACCGTCTTCTTGAGCAGTGACCCAAGTTCTCTGCC
AAAGGTGCCAGTTACCAGTTCAGAAGCTAAGACCCAGGAAAGTGGCCCAGTGGGGACAGT
CACTAAGAAAGCAACCAATTCTCTGGAGTCATTCTTCCAGAAAGTTGCAGAAAAGCAGAA
GGTCAAAGAAGCTTCACTGTTACCTCTTACTGCCACTACTCAGACCCCTGTGAGCAATTC
ACCATCCAAGCCCTCATTACCTTTCCAAACCAGTTCTACTACAGGATCTGAGCCCTTCTT
TAAGCAGAAGACTCTTCTTCTAAAGCAGAAACAGCTTAATGATCCTTCAGTTTTCTTCCC
TCCACAAAAACCACAGTCCAGCCCTAAAGAGCTACCAACAGAGTATCCAGATGGTGGCCC
TGCCTGTGAAAACGCATTGAAGCTAGATTCAGCCCAGGCAACTCCTGCAGAGGTGGATTC
GGCCCAGAACAGCTCTTTAACTTCCAAGTCTGCTCTGGAGGAGGCAACCGCTACCCTCAG
TCTCCTAGCTGCTGAGGACCAAGTCCTCTGTGAGAAGTGCGGCTCTCTGGTACCTGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCGTCAGCTGGCACAGACATCACCGTCTTCTTGAGCAGTGACCCAAGTTCTCTGCC
AAAGGTGCCAGTTACCAGTTCAGAAGCTAAGACCCAGGAAAGTGGCCCAGTGGGGACAGT
CACTAAGAAAGCAACCAATTCTCTGGAGTCATTCTTCCAGAAAGTTGCAGAAAAGCAGAA
GGTCAAAGAAGCTTCACTGTTACCTCTTACTGCCACTACTCAGACCCCTGTGAGCAATTC
ACCATCCAAGCCCTCATTACCTTTCCAAACCAGTTCTACTACAGGATCTGAGCCCTTCTT
TAAGCAGAAGACTCTTCTTCTAAAGCAGAAACAGCTTAATGATCCTTCAGTTTTCTTCCC
TCCACAAAAACCACAGTCCAGCCCTAAAGAGCTACCAACAGAGTATCCAGATGGTGGCCC
TGCCTGTGAAAACGCATTGAAGCTAGATTCAGCCCAGGCAACTCCTGCAGAGGTGGATTC
GGCCCAGAACAGCTCTTTAACTTCCAAGTCTGCTCTGGAGGAGGCAACCGCTACCCTCAG
TCTCCTAGCTGCTGAGGACCAAGTCCTCTGTGAGAAGTGCGGCTCTCTGGTACCTGTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819125|ref|XP_591312.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819125|ref|XP_591312.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               82-201, - strand, RNAz p=0.936095
               

               
               242-361, - strand, RNAz p=0.513395
               

               
               467-562, - strand, RNAz p=0.987166

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.936095
               

               
               242-361, - strand, RNAz p=0.513395
               

               
               467-562, - strand, RNAz p=0.987166

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-600, gnl|bosTau2|chr23 (16091971-16092601)
               

               
               3-600, gnl|Hg17|chr6 (43689428-43690064)
               

               
               3-600, gnl|Mm7|chr17 (44302447-44301865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-600, gnl|bosTau2|chr23 (16091971-16092601)
               

               
               3-600, gnl|Hg17|chr6 (43689428-43690064)
               

               
               3-600, gnl|Mm7|chr17 (44302447-44301865)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               cbl (0.114797)

	82-201, - strand, RNAz p=0.936095
	242-361, - strand, RNAz p=0.513395
	467-562, - strand, RNAz p=0.987166

	3-600, gnl\|bosTau2\|chr23 (16091971-16092601)
	3-600, gnl\|Hg17\|chr6 (43689428-43690064)
	3-600, gnl\|Mm7\|chr17 (44302447-44301865)