Non-Coding RNA Search

Ss1.1-rcbl0_022620.5

Sequence:


               
               GCTTGGGCAGGAACAAAAGATGAACAAACCCATAACAGCTTCAACATATGTGCGCTGCCT
CAATGTTGGACTAATTAGGAAGTTGTCAGATTTTATTGATCCTCAAGAAGGATGGAAGAA
GTTAGCAGTAGCTATTAAAAAACCATCTGGTGATGACAGATACAACCAGTTTCATATAAG
GAGATTCGAAGCATTACTTCAAACTGGAAAAAGTCCCACTTGTGAATTACTGTTTGACTG
GGGCACCACAAATTGCACAGTTGGTGATCTTGTGGATCTCTTGGTCCAAAATGAGTTTTT
GCCCCCGGCACCCCGCGCTTGGGCAGATGCTGTTCCCAAACCCATTAACACACTGCCTTC
TAAAGTCACTGTAACAGTTGAGCAGAAACAGATGCCTCTCTATGGTTCAAACAGGACATC
TGTGATGCCCTGTCAGAATCCTGAACACAACTCTATGCCACCAGACTCTTCAAGTCCAGA
AAGTAAAAGTTTAGAAGTTAGTGATACACGTTTTCACAGTTTTGCGTTCTGTGAATTGAA
GGATGTTACAAATAACTTTGATGAGCGACCCGTTTCTATTGGTGGTAACAAGATGGGAGA
GGGAGGATTTGGAGTTGTGTATAAAGGCTACATGAACAACAGGGCTGTTGCAGTGAAGAA
GCTTGCAGCAGTGGTTGACATTAGTACTGAAGAACTGAAACAACAGTTTGATCAAGAAAT
AAAAGTACTGGCAAAGTGTCAGCATGAAAACTTAGTAGAACTACTTGGTTTCTCAAGTGA
TGGAGATGACCTCTGCTTAGTATATGTTTACATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGGCAGGAACAAAAGATGAACAAACCCATAACAGCTTCAACATATGTGCGCTGCCT
CAATGTTGGACTAATTAGGAAGTTGTCAGATTTTATTGATCCTCAAGAAGGATGGAAGAA
GTTAGCAGTAGCTATTAAAAAACCATCTGGTGATGACAGATACAACCAGTTTCATATAAG
GAGATTCGAAGCATTACTTCAAACTGGAAAAAGTCCCACTTGTGAATTACTGTTTGACTG
GGGCACCACAAATTGCACAGTTGGTGATCTTGTGGATCTCTTGGTCCAAAATGAGTTTTT
GCCCCCGGCACCCCGCGCTTGGGCAGATGCTGTTCCCAAACCCATTAACACACTGCCTTC
TAAAGTCACTGTAACAGTTGAGCAGAAACAGATGCCTCTCTATGGTTCAAACAGGACATC
TGTGATGCCCTGTCAGAATCCTGAACACAACTCTATGCCACCAGACTCTTCAAGTCCAGA
AAGTAAAAGTTTAGAAGTTAGTGATACACGTTTTCACAGTTTTGCGTTCTGTGAATTGAA
GGATGTTACAAATAACTTTGATGAGCGACCCGTTTCTATTGGTGGTAACAAGATGGGAGA
GGGAGGATTTGGAGTTGTGTATAAAGGCTACATGAACAACAGGGCTGTTGCAGTGAAGAA
GCTTGCAGCAGTGGTTGACATTAGTACTGAAGAACTGAAACAACAGTTTGATCAAGAAAT
AAAAGTACTGGCAAAGTGTCAGCATGAAAACTTAGTAGAACTACTTGGTTTCTCAAGTGA
TGGAGATGACCTCTGCTTAGTATATGTTTACATGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835266|ref|XP_581118.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835266|ref|XP_581118.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               62-181, - strand, RNAz p=0.623206

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-181, - strand, RNAz p=0.623206

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               9-181, gnl|bosTau2|chr5 (23425365-23425537)
               

               
               9-181, gnl|Hg17|chr12 (42448171-42448343)
               

               
               9-181, gnl|Mm7|chr15 (94551679-94551849)
               


               
               325-511, gnl|bosTau2|chr5 (23429093-23429282)
               

               
               325-511, gnl|canFam2|chr27 (13340405-13340155)
               

               
               325-511, gnl|dasNov1|scaffold_60088 (7152-6903)
               

               
               325-511, gnl|hg17|chr12 (42452193-42452442)
               

               
               325-511, gnl|Hg17|chr12 (42452248-42452434)
               

               
               325-511, gnl|loxAfr1|scaffold_594 (24951-25203)
               

               
               325-511, gnl|mm7|chr15 (94557628-94557872)
               

               
               325-511, gnl|Mm7|chr15 (94557678-94557864)
               

               
               325-511, gnl|monDom2|scaffold_31 (30992426-30992186)
               

               
               325-511, gnl|panTro1|chr10_random (18213882-18214131)
               

               
               325-511, gnl|rheMac2|chr11 (40734733-40734979)
               

               
               325-511, gnl|rn3|chr7 (133143454-133143691)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-181, gnl|bosTau2|chr5 (23425365-23425537)
               

               
               9-181, gnl|Hg17|chr12 (42448171-42448343)
               

               
               9-181, gnl|Mm7|chr15 (94551679-94551849)
               


               
               325-511, gnl|bosTau2|chr5 (23429093-23429282)
               

               
               325-511, gnl|canFam2|chr27 (13340405-13340155)
               

               
               325-511, gnl|dasNov1|scaffold_60088 (7152-6903)
               

               
               325-511, gnl|hg17|chr12 (42452193-42452442)
               

               
               325-511, gnl|Hg17|chr12 (42452248-42452434)
               

               
               325-511, gnl|loxAfr1|scaffold_594 (24951-25203)
               

               
               325-511, gnl|mm7|chr15 (94557628-94557872)
               

               
               325-511, gnl|Mm7|chr15 (94557678-94557864)
               

               
               325-511, gnl|monDom2|scaffold_31 (30992426-30992186)
               

               
               325-511, gnl|panTro1|chr10_random (18213882-18214131)
               

               
               325-511, gnl|rheMac2|chr11 (40734733-40734979)
               

               
               325-511, gnl|rn3|chr7 (133143454-133143691)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.688784)
               

               
               csk (0.140746)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               csk (0.140746)
               

               
               clu (0.119646)

	9-181, gnl\|bosTau2\|chr5 (23425365-23425537)
	9-181, gnl\|Hg17\|chr12 (42448171-42448343)
	9-181, gnl\|Mm7\|chr15 (94551679-94551849)

	325-511, gnl\|bosTau2\|chr5 (23429093-23429282)
	325-511, gnl\|canFam2\|chr27 (13340405-13340155)
	325-511, gnl\|dasNov1\|scaffold_60088 (7152-6903)
	325-511, gnl\|hg17\|chr12 (42452193-42452442)
	325-511, gnl\|Hg17\|chr12 (42452248-42452434)
	325-511, gnl\|loxAfr1\|scaffold_594 (24951-25203)
	325-511, gnl\|mm7\|chr15 (94557628-94557872)
	325-511, gnl\|Mm7\|chr15 (94557678-94557864)
	325-511, gnl\|monDom2\|scaffold_31 (30992426-30992186)
	325-511, gnl\|panTro1\|chr10_random (18213882-18214131)
	325-511, gnl\|rheMac2\|chr11 (40734733-40734979)
	325-511, gnl\|rn3\|chr7 (133143454-133143691)