Non-Coding RNA Search

Ss1.1-rcbl0_022828.5

Sequence:


               
               GTTCAAAGGAGACTCTTTTCATTCTTGTGGTATTTAACATTCAGAAATTTTCTTCAGCAT
TGGAAATACCTCAGGCTGTTTTTATTTTGCAGGTAAGTGTTTTAACTTAAGTGTACCAAT
AATTGTATACCAGAAATTTTGGCGAATAATAACCTTCATTTCTTCCATATGTCTTTCAGT
TTTTGCTGATAGGTCAAATATGAACGTGTATGCACATTCTCTTTAGTTAAGGCACCAGTT
ATTATGGTTGGTATTTCTAAGATGTACTTTAAAAAGAAGTTCTTTAAATTTCCTGAATAA
TTTCTGGAGATTTTGGAGTATGTATATGATTATAGTATGCGTCTCTGTGTGTGTGTGTGT
GTGTGTGTATGTGTGTATATATATGTATATGCTTGAAGTTACTTTATTTTCTATTAACTG
GAATTATTTTAATATTCTTTATTGAATAAACGCTGTAATTTGTTTGCTGTGGAACTTATT
CTTGAATGTAAACTTACTTTTTCACATGCATGAAAGGTATTTCTTAATCAGAGGTGGCTT
AATTGCATTGAAATGGCTATTTTTTTTTAACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAAAGGAGACTCTTTTCATTCTTGTGGTATTTAACATTCAGAAATTTTCTTCAGCAT
TGGAAATACCTCAGGCTGTTTTTATTTTGCAGGTAAGTGTTTTAACTTAAGTGTACCAAT
AATTGTATACCAGAAATTTTGGCGAATAATAACCTTCATTTCTTCCATATGTCTTTCAGT
TTTTGCTGATAGGTCAAATATGAACGTGTATGCACATTCTCTTTAGTTAAGGCACCAGTT
ATTATGGTTGGTATTTCTAAGATGTACTTTAAAAAGAAGTTCTTTAAATTTCCTGAATAA
TTTCTGGAGATTTTGGAGTATGTATATGATTATAGTATGCGTCTCTGTGTGTGTGTGTGT
GTGTGTGTATGTGTGTATATATATGTATATGCTTGAAGTTACTTTATTTTCTATTAACTG
GAATTATTTTAATATTCTTTATTGAATAAACGCTGTAATTTGTTTGCTGTGGAACTTATT
CTTGAATGTAAACTTACTTTTTCACATGCATGAAAGGTATTTCTTAATCAGAGGTGGCTT
AATTGCATTGAAATGGCTATTTTTTTTTAACTAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-324, gnl|bosTau2|chr9 (7926148-7925828)
               

               
               1-324, gnl|Hg17|chr6 (76021694-76021380)
               

               
               1-324, gnl|Mm7|chr9 (79846816-79846515)
               


               
               378-576, gnl|bosTau2|chr9 (7925817-7925619)
               

               
               378-576, gnl|Hg17|chr6 (76021369-76021158)
               

               
               378-576, gnl|Mm7|chr9 (79846499-79846301)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr9 (7926148-7925828)
               

               
               1-324, gnl|Hg17|chr6 (76021694-76021380)
               

               
               1-324, gnl|Mm7|chr9 (79846816-79846515)
               


               
               378-576, gnl|bosTau2|chr9 (7925817-7925619)
               

               
               378-576, gnl|Hg17|chr6 (76021369-76021158)
               

               
               378-576, gnl|Mm7|chr9 (79846499-79846301)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.344392)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)

	1-324, gnl\|bosTau2\|chr9 (7926148-7925828)
	1-324, gnl\|Hg17\|chr6 (76021694-76021380)
	1-324, gnl\|Mm7\|chr9 (79846816-79846515)

	378-576, gnl\|bosTau2\|chr9 (7925817-7925619)
	378-576, gnl\|Hg17\|chr6 (76021369-76021158)
	378-576, gnl\|Mm7\|chr9 (79846499-79846301)