Ss1.1-rcbl0_022888.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCTGCTCCCTGAAATGGACTTCCTCCTCATCTGTACAGATTTGTTAAACACTTCTAT TTGCTTCTTACTAATAGGGTTTATATTAGGATTCATGACCATTGGCTACGATGACATGTT ACTCTCCACAGTCAAACTGACCTTTCTGAAGAGTCCTTCTTGTGTTCTAAAATGTTCCAG CATATATGTGATTTATATAACTTTGTTGCTGCGTACATTGTCTTGGGGTTTATGGAGATG AATTATTATGTTTGCACTAAGATTTGCTGGGAGTGGTAGGTGGACTTATCTGTCAATAAG GACTGTCTCTTTTTTTCTTTTGCTTTTTTTTTTTTTTTTTGTACATAGGCGATTGATCAT ACTGTATTTGTTTTAACCCCACAGTGTTTTACTCCACTTTCCAAAAGATCAATTGGCACT TTTTTCCTTTTTTTTTTTTTTAATGAAAGTAAGATTTTGTCTAATTTTAGGGCAAATGAT AACTAGAAGGATTAAAGTAGACAGATAGTTTTAAGTGGAGTATATTTTTAAAACTAAGAA CATGTATATTGGTCTTGTGTTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCTGCTCCCTGAAATGGACTTCCTCCTCATCTGTACAGATTTGTTAAACACTTCTAT TTGCTTCTTACTAATAGGGTTTATATTAGGATTCATGACCATTGGCTACGATGACATGTT ACTCTCCACAGTCAAACTGACCTTTCTGAAGAGTCCTTCTTGTGTTCTAAAATGTTCCAG CATATATGTGATTTATATAACTTTGTTGCTGCGTACATTGTCTTGGGGTTTATGGAGATG AATTATTATGTTTGCACTAAGATTTGCTGGGAGTGGTAGGTGGACTTATCTGTCAATAAG GACTGTCTCTTTTTTTCTTTTGCTTTTTTTTTTTTTTTTTGTACATAGGCGATTGATCAT ACTGTATTTGTTTTAACCCCACAGTGTTTTACTCCACTTTCCAAAAGATCAATTGGCACT TTTTTCCTTTTTTTTTTTTTTAATGAAAGTAAGATTTTGTCTAATTTTAGGGCAAATGAT AACTAGAAGGATTAAAGTAGACAGATAGTTTTAAGTGGAGTATATTTTTAAAACTAAGAA CATGTATATTGGTCTTGTGTTACC |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-316, gnl|bosTau2|chr16 (23567713-23567392) | |
| 1-316, gnl|canFam2|chr7 (37237016-37237535) | |
| 1-316, gnl|canFam2|chr7 (37237726-37237016) | |
| 1-316, gnl|dasNov1|scaffold_40623 (4847-4325) | |
| 1-316, gnl|dasNov1|scaffold_40623 (4130-4847) | |
| 1-316, gnl|echTel1|scaffold_306688 (51745-51238) | |
| 1-316, gnl|echTel1|scaffold_306688 (51020-51745) | |
| 1-316, gnl|galGal2|chr3 (31593942-31593438) | |
| 1-316, gnl|galGal2|chr3 (31593259-31593942) | |
| 1-316, gnl|hg17|chr1 (239615072-239615588) | |
| 1-316, gnl|Hg17|chr1 (239615414-239615097) | |
| 1-316, gnl|hg17|chr4 (119832871-119833580) | |
| 1-316, gnl|loxAfr1|scaffold_11171 (7724-8240) | |
| 1-316, gnl|loxAfr1|scaffold_11171 (8434-7724) | |
| 1-316, gnl|mm7|chr1 (176701250-176701765) | |
| 1-316, gnl|mm7|chr1 (176701952-176701250) | |
| 1-316, gnl|Mm7|chr1 (176701582-176701275) | |
| 1-316, gnl|monDom2|scaffold_13 (40783360-40782867) | |
| 1-316, gnl|monDom2|scaffold_13 (40782688-40783360) | |
| 1-316, gnl|panTro1|chr1 (223605814-223606330) | |
| 1-316, gnl|panTro1|chr1 (223606523-223605814) | |
| 1-316, gnl|rheMac2|chr1 (213981874-213981358) | |
| 1-316, gnl|rheMac2|chr1 (213981165-213981874) | |
| 1-316, gnl|rn3|chr13 (92692521-92693030) | |
| 1-316, gnl|rn3|chr13 (92693217-92692524) | |
| 335-564, gnl|bosTau2|chr16 (23567397-23567166) | |
| 335-564, gnl|canFam2|chr7 (37236617-37236966) | |
| 335-564, gnl|dasNov1|scaffold_40623 (5257-4897) | |
| 335-564, gnl|echTel1|scaffold_306688 (52108-51794) | |
| 335-564, gnl|galGal2|chr3 (31594380-31593992) | |
| 335-564, gnl|hg17|chr1 (239614668-239615022) | |
| 335-564, gnl|Hg17|chr1 (239615102-239614876) | |
| 335-564, gnl|loxAfr1|scaffold_11171 (7268-7621) | |
| 335-564, gnl|mm7|chr1 (176700832-176701200) | |
| 335-564, gnl|Mm7|chr1 (176701277-176701032) | |
| 335-564, gnl|monDom2|scaffold_13 (40783790-40783409) | |
| 335-564, gnl|panTro1|chr1 (223605414-223605764) | |
| 335-564, gnl|rheMac2|chr1 (213982276-213981924) | |
| 335-564, gnl|rn3|chr13 (92692104-92692475) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-316, gnl|bosTau2|chr16 (23567713-23567392) | |
| 1-316, gnl|canFam2|chr7 (37237016-37237535) | |
| 1-316, gnl|canFam2|chr7 (37237726-37237016) | |
| 1-316, gnl|dasNov1|scaffold_40623 (4847-4325) | |
| 1-316, gnl|dasNov1|scaffold_40623 (4130-4847) | |
| 1-316, gnl|echTel1|scaffold_306688 (51745-51238) | |
| 1-316, gnl|echTel1|scaffold_306688 (51020-51745) | |
| 1-316, gnl|galGal2|chr3 (31593942-31593438) | |
| 1-316, gnl|galGal2|chr3 (31593259-31593942) | |
| 1-316, gnl|hg17|chr1 (239615072-239615588) | |
| 1-316, gnl|Hg17|chr1 (239615414-239615097) | |
| 1-316, gnl|hg17|chr4 (119832871-119833580) | |
| 1-316, gnl|loxAfr1|scaffold_11171 (7724-8240) | |
| 1-316, gnl|loxAfr1|scaffold_11171 (8434-7724) | |
| 1-316, gnl|mm7|chr1 (176701250-176701765) | |
| 1-316, gnl|mm7|chr1 (176701952-176701250) | |
| 1-316, gnl|Mm7|chr1 (176701582-176701275) | |
| 1-316, gnl|monDom2|scaffold_13 (40783360-40782867) | |
| 1-316, gnl|monDom2|scaffold_13 (40782688-40783360) | |
| 1-316, gnl|panTro1|chr1 (223605814-223606330) | |
| 1-316, gnl|panTro1|chr1 (223606523-223605814) | |
| 1-316, gnl|rheMac2|chr1 (213981874-213981358) | |
| 1-316, gnl|rheMac2|chr1 (213981165-213981874) | |
| 1-316, gnl|rn3|chr13 (92692521-92693030) | |
| 1-316, gnl|rn3|chr13 (92693217-92692524) | |
| 335-564, gnl|bosTau2|chr16 (23567397-23567166) | |
| 335-564, gnl|canFam2|chr7 (37236617-37236966) | |
| 335-564, gnl|dasNov1|scaffold_40623 (5257-4897) | |
| 335-564, gnl|echTel1|scaffold_306688 (52108-51794) | |
| 335-564, gnl|galGal2|chr3 (31594380-31593992) | |
| 335-564, gnl|hg17|chr1 (239614668-239615022) | |
| 335-564, gnl|Hg17|chr1 (239615102-239614876) | |
| 335-564, gnl|loxAfr1|scaffold_11171 (7268-7621) | |
| 335-564, gnl|mm7|chr1 (176700832-176701200) | |
| 335-564, gnl|Mm7|chr1 (176701277-176701032) | |
| 335-564, gnl|monDom2|scaffold_13 (40783790-40783409) | |
| 335-564, gnl|panTro1|chr1 (223605414-223605764) | |
| 335-564, gnl|rheMac2|chr1 (213982276-213981924) | |
| 335-564, gnl|rn3|chr13 (92692104-92692475) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbl (0.229595) | |
| nlu (0.191681) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| nlu (0.191681) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| eje (0.0988338) |