Non-Coding RNA Search

Ss1.1-rcbl0_022954.5

Sequence:


               
               CTCACAGACTATCTGATGAAAATCCTTACAGAGCGCGGTTATTCATTCACAACCACAGCC
GAGAGAGAAATCGTCAGAGACATTAAGGAAAAATTATGTTATGTAGCACTTGACTTTGAA
CAGGAAATGCAAACAGCAGCCTCCTCGTCATCTCTGGAGAAGAGTTACGAACTTCCTGAC
GGTCAGGTCATCACCATTGGCAACGAAAGGTTCAGGTGCCCAGAGGCTCTGTTCCAGCCT
TCATTCTTGGGAATGGAATCTGCCGGTATTCACGAAACCACATACAACAGTATCATGAAG
TGTGACGTAGACATCCGTAAAGACTTGTACGCCAACACTGTTCTTTCCGGTGGTAGCACA
ATGTTCCCAGGTATCGCAGACCGTCTGCAGAAGGAAATCACTGCCCTCGCTCCACCAACA
ATGAAAATCAAGATCATTGCTCCACCAGAGAGGAAATACTCAGTCTGGATCGGTGGCTCC
ATCTTGGCTTCTCTGTCCACCTTCCAACAGATGTGGATCAGCAAACAGGAATACGATGAG
TCCGGCCCATCCATTGTCCACAGGAAATGCTTCTAAATTATTCTTCAAATTAATAGGACT
TCAAATTATTTTTACATTTTCGGTACTGTGAAGAATGGACTCAACCTCGTGCTTTATTGA
ATTAAACAGGACACGCTGACAGACAGAATCTCGTTTTGTCCGATAAAGTGCGATACCTAA
GTGTTTTTTTAAAGACACCAGTGACATTCCGTCAGCAGCCTGGGTAAGGCAATGGTTTCG
AAGATTTTTACTAACCAAAGTATATGGACAACTATATATACTAAGGATACTTGCCGTCTT
TATTTAATATAATTTAATTTAAATAAATCTATGCAAATCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACAGACTATCTGATGAAAATCCTTACAGAGCGCGGTTATTCATTCACAACCACAGCC
GAGAGAGAAATCGTCAGAGACATTAAGGAAAAATTATGTTATGTAGCACTTGACTTTGAA
CAGGAAATGCAAACAGCAGCCTCCTCGTCATCTCTGGAGAAGAGTTACGAACTTCCTGAC
GGTCAGGTCATCACCATTGGCAACGAAAGGTTCAGGTGCCCAGAGGCTCTGTTCCAGCCT
TCATTCTTGGGAATGGAATCTGCCGGTATTCACGAAACCACATACAACAGTATCATGAAG
TGTGACGTAGACATCCGTAAAGACTTGTACGCCAACACTGTTCTTTCCGGTGGTAGCACA
ATGTTCCCAGGTATCGCAGACCGTCTGCAGAAGGAAATCACTGCCCTCGCTCCACCAACA
ATGAAAATCAAGATCATTGCTCCACCAGAGAGGAAATACTCAGTCTGGATCGGTGGCTCC
ATCTTGGCTTCTCTGTCCACCTTCCAACAGATGTGGATCAGCAAACAGGAATACGATGAG
TCCGGCCCATCCATTGTCCACAGGAAATGCTTCTAAATTATTCTTCAAATTAATAGGACT
TCAAATTATTTTTACATTTTCGGTACTGTGAAGAATGGACTCAACCTCGTGCTTTATTGA
ATTAAACAGGACACGCTGACAGACAGAATCTCGTTTTGTCCGATAAAGTGCGATACCTAA
GTGTTTTTTTAAAGACACCAGTGACATTCCGTCAGCAGCCTGGGTAAGGCAATGGTTTCG
AAGATTTTTACTAACCAAAGTATATGGACAACTATATATACTAAGGATACTTGCCGTCTT
TATTTAATATAATTTAATTTAAATAAATCTATGCAAATCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGGGGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32816054|gb|AAP88387.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32816054|gb|AAP88387.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-404, - strand, RNAz p=0.854576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-404, - strand, RNAz p=0.854576

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               46-575, gnl|bosTau2|chr1 (93219057-93218528)
               

               
               46-575, gnl|Hg17|chr7 (5341357-5340621)
               

               
               46-575, gnl|Mm7|chr5 (141937453-141936704)
               


               
               166-574, gnl|bosTau2|chr16 (36111848-36111440)
               

               
               166-574, gnl|Hg17|chr1 (2962131-2962539)
               

               
               166-574, gnl|Mm7|chr4 (153656496-153656088)
               


               
               245-432, gnl|bosTau2|chr10 (19084515-19084328)
               

               
               245-432, gnl|Hg17|chr15 (32870794-32870607)
               

               
               245-432, gnl|Mm7|chr2 (113789150-113788963)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-575, gnl|bosTau2|chr1 (93219057-93218528)
               

               
               46-575, gnl|Hg17|chr7 (5341357-5340621)
               

               
               46-575, gnl|Mm7|chr5 (141937453-141936704)
               


               
               166-574, gnl|bosTau2|chr16 (36111848-36111440)
               

               
               166-574, gnl|Hg17|chr1 (2962131-2962539)
               

               
               166-574, gnl|Mm7|chr4 (153656496-153656088)
               


               
               245-432, gnl|bosTau2|chr10 (19084515-19084328)
               

               
               245-432, gnl|Hg17|chr15 (32870794-32870607)
               

               
               245-432, gnl|Mm7|chr2 (113789150-113788963)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.229595)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               clu (0.119646)

	46-575, gnl\|bosTau2\|chr1 (93219057-93218528)
	46-575, gnl\|Hg17\|chr7 (5341357-5340621)
	46-575, gnl\|Mm7\|chr5 (141937453-141936704)

	166-574, gnl\|bosTau2\|chr16 (36111848-36111440)
	166-574, gnl\|Hg17\|chr1 (2962131-2962539)
	166-574, gnl\|Mm7\|chr4 (153656496-153656088)

	245-432, gnl\|bosTau2\|chr10 (19084515-19084328)
	245-432, gnl\|Hg17\|chr15 (32870794-32870607)
	245-432, gnl\|Mm7\|chr2 (113789150-113788963)