Non-Coding RNA Search

Ss1.1-rcbl0_023051.5

Sequence:


               
               AAAAAGAAAGTCTCTACGGACAACTGGTTTCTATTCAGGATTTTCAGAAGTTGCTGAAAA
AAGGATAAAACTTTTAAATAACTCTGATGAAAGACTTCAGAACAGCAGAGCTAAAGATCG
AAAAGATGTCTGGTCAAGTATTCAGGGACAGTGGCCTAAAAAAACGCTCAAGGAACTTTT
TTCAGACTCTGACACTGAGGCTGCAGCCTCCCCACCCCATCCTGCCCCAGAGGATGGCCC
GGCAGAGGGGTCCCTACAGACTGTGGCCGAGGAGGAGAGCTGCTCCCCCAGTGCTGACCT
GGCGCCGGCCAGTGGCGACAGCAAACCTGCTGAGGAGAAGCCGGCAGAGGTCAGCGACAA
AAAGTCTGAATTTCCAAGTAGCGGTAGTAATTCAGTGCTAAATACCCCTCCTACCACACC
TGAGTCGCCTTCCTCAGTCACTGTGACGGAAGCCAGTCGGCAGCAGTCTTCTGTAACAGT
ATCTGAGCCTCTGGCTCCCAACCAGGAGGAAGTTCATCAAAAAAGCAGAAACGAAGCCAT
AAAGCGACAGTGGTCAACAACAAAAAGAAGGGAAAAGGCACAAATAGTAGTGATAGTGAA
GAACTTTCTGCTGGTGAAAGTATAGCTAAGACTCAGCCTGTCAAATCAGTTTCCACTGGA
ATAAAGGCTCATGGTACCAAATCTCCTGCAAGGACTCAGTCTCCAGGAAAATGTGGAAAG
AATGGCGATAAGGATCCTGATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGAAAGTCTCTACGGACAACTGGTTTCTATTCAGGATTTTCAGAAGTTGCTGAAAA
AAGGATAAAACTTTTAAATAACTCTGATGAAAGACTTCAGAACAGCAGAGCTAAAGATCG
AAAAGATGTCTGGTCAAGTATTCAGGGACAGTGGCCTAAAAAAACGCTCAAGGAACTTTT
TTCAGACTCTGACACTGAGGCTGCAGCCTCCCCACCCCATCCTGCCCCAGAGGATGGCCC
GGCAGAGGGGTCCCTACAGACTGTGGCCGAGGAGGAGAGCTGCTCCCCCAGTGCTGACCT
GGCGCCGGCCAGTGGCGACAGCAAACCTGCTGAGGAGAAGCCGGCAGAGGTCAGCGACAA
AAAGTCTGAATTTCCAAGTAGCGGTAGTAATTCAGTGCTAAATACCCCTCCTACCACACC
TGAGTCGCCTTCCTCAGTCACTGTGACGGAAGCCAGTCGGCAGCAGTCTTCTGTAACAGT
ATCTGAGCCTCTGGCTCCCAACCAGGAGGAAGTTCATCAAAAAAGCAGAAACGAAGCCAT
AAAGCGACAGTGGTCAACAACAAAAAGAAGGGAAAAGGCACAAATAGTAGTGATAGTGAA
GAACTTTCTGCTGGTGAAAGTATAGCTAAGACTCAGCCTGTCAAATCAGTTTCCACTGGA
ATAAAGGCTCATGGTACCAAATCTCCTGCAAGGACTCAGTCTCCAGGAAAATGTGGAAAG
AATGGCGATAAGGATCCTGATCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.882527

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.882527

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-513, gnl|bosTau2|chr28 (2285435-2285955)
               

               
               2-513, gnl|Hg17|chr1 (231671622-231671102)
               

               
               2-513, gnl|Mm7|chr13 (13553171-13553691)
               


               
               581-744, gnl|bosTau2|chr28 (2291396-2291559)
               

               
               581-744, gnl|Hg17|chr1 (231664755-231664592)
               

               
               581-744, gnl|Mm7|chr13 (13559187-13559350)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-513, gnl|bosTau2|chr28 (2285435-2285955)
               

               
               2-513, gnl|Hg17|chr1 (231671622-231671102)
               

               
               2-513, gnl|Mm7|chr13 (13553171-13553691)
               


               
               581-744, gnl|bosTau2|chr28 (2291396-2291559)
               

               
               581-744, gnl|Hg17|chr1 (231664755-231664592)
               

               
               581-744, gnl|Mm7|chr13 (13559187-13559350)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	2-513, gnl\|bosTau2\|chr28 (2285435-2285955)
	2-513, gnl\|Hg17\|chr1 (231671622-231671102)
	2-513, gnl\|Mm7\|chr13 (13553171-13553691)

	581-744, gnl\|bosTau2\|chr28 (2291396-2291559)
	581-744, gnl\|Hg17\|chr1 (231664755-231664592)
	581-744, gnl\|Mm7\|chr13 (13559187-13559350)