Non-Coding RNA Search

Ss1.1-rcbl0_023103.5

Sequence:


               
               GTGAGATCTTTATAGTATTCTAGGCCCTGAAGGTAGAATTTTTCTTTAACTTATTTTGAA
ATTTGAGATTTGAATTTTATATATTGTTTACAGTCAGAGTAAATCACTGGATTTTTTTTT
TGTTTTGATTTGCTCTGTTTTAATCAGATCTAGAGTTTATATACTCTACTAAAGAATTTG
CATCAGCTGATTTAAATATTCAGAGATATTTGCTTGTTGAAATAACTGGCAATGTGAAAA
GATAGTAAAAAATTCTAGAAATCCTTTAATTGTATTTCTCTTATCAGTTGTGAAGCAAAA
TATCTGAAGTGAGTCTATGGCTTGGGAGTGTGTATTGAGACCTTTTCTAGTATAAGTATC
TTTTCTTAAGTTTGAGGGAACAGAAAATTGTGCAAAGGAGTTTTCATTCCTGAAAGTTGC
AGATCCACAAAAACTAACAGAATAATTTGGCAAAAAAGAAAAAGATACAAACAAACACAC
ATTCTACATGTGTATATACAATGCTATATAGATATGTATTTATTATATCATAAACTACGC
CAATAGGTAACTTTAAGGATTTCTCCCTAGCCTTGTAAAATGAAATGAATGTTTTTCTTT
GAACACTGCAATATATGTATGTTTCAAGGTTATTTAACAGTGTACTATGGTTTTATATCT
TGACTTGCCTTGTACATCTTTCAGTTTTGGAATATCTGCGTCTAAGCACAATATCTTCAC
ACTGTGCTATATTGCTGCTGAACTAAATGCACTTTTCCCCACATGTGGGGCACTGGCTTC
AAACAATTCAGTTCAGTACCATTGATTTCAATCTCATCTTTCCTTTTTTGGTAGTTGTTA
ATACAGTTATGGAAAAGAGCACATTGCCTAGAAGCCATTGATAGTTCAGTGGAAGTTCTG
TAAGATGTGCATGTGCTACTTGATGTATTTTCTTTTGCTTTACTGCTTTTAAGGCTAGCA
GTATTGTAAATCTGTGCCCCTTATACAGTACTCTTACTTTTGATAGTGTCAGTCTAAGTC
AATTTAATTATTAAAGAGATTCACAGAGCAAGTACATTTTAGATATCATCCTAAAAAAAA
CACTTCCCATATAATGAATAACTATTATGTATAATTATGTATTGCTGCTTGGTTTTCTTT
CTTTTTTTTTTTTTCTTTTCCATTTAGATGATGGGCATTGTATTTTAAATAAAATCATTT
TTGAAGTAAGGCTGTAATATTAACATAGAAATTTGGAGTGTTGTTTTGCTTTTCCTGACA
CTCAAAATCAGGACTAAGTTTGAGGTTGAACCTATAATCATAATTGGCAATTTTTAAAGG
AGCAACTAAGAAATGGAAGGCAGGTAAAGATATAAAACCGTAGAATGCTTAAATGTGCTG
TAAAACTATTGTAGATGTCACTGGATTTTACCAAGTAATATCCTTTCTTCTTTTTTTTCC
ATCTACTGTGGCTTTTCAGTTAAAATTTTGTTTATAAAAGGAATTTGTTTATTACAGCTC
TACCTAGAGCTTGTGTGTATGTGTGGTTTTTAAAAATCTCATATCCAGGTGTGTTTATAT
CTTAAGATGATGGAACTTGAACTTTAAAGGCAGTAACCTAATGTCTTTTTTTAAAAATAT
GGTTATTGTTTCTTAAAAATGAAAATAGATATGGTTTTTAAAACATTTTGGTTCCTACCT
TCATTTACATTAGTTTGTAACAGAAATGCAAAGTGATCACAATCCTACATGTAGAAGTTA
TGTTATAGGCAAACCATCTGAGGAATTATAAATTTTTTTGAGACGCATAAAACGTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGATCTTTATAGTATTCTAGGCCCTGAAGGTAGAATTTTTCTTTAACTTATTTTGAA
ATTTGAGATTTGAATTTTATATATTGTTTACAGTCAGAGTAAATCACTGGATTTTTTTTT
TGTTTTGATTTGCTCTGTTTTAATCAGATCTAGAGTTTATATACTCTACTAAAGAATTTG
CATCAGCTGATTTAAATATTCAGAGATATTTGCTTGTTGAAATAACTGGCAATGTGAAAA
GATAGTAAAAAATTCTAGAAATCCTTTAATTGTATTTCTCTTATCAGTTGTGAAGCAAAA
TATCTGAAGTGAGTCTATGGCTTGGGAGTGTGTATTGAGACCTTTTCTAGTATAAGTATC
TTTTCTTAAGTTTGAGGGAACAGAAAATTGTGCAAAGGAGTTTTCATTCCTGAAAGTTGC
AGATCCACAAAAACTAACAGAATAATTTGGCAAAAAAGAAAAAGATACAAACAAACACAC
ATTCTACATGTGTATATACAATGCTATATAGATATGTATTTATTATATCATAAACTACGC
CAATAGGTAACTTTAAGGATTTCTCCCTAGCCTTGTAAAATGAAATGAATGTTTTTCTTT
GAACACTGCAATATATGTATGTTTCAAGGTTATTTAACAGTGTACTATGGTTTTATATCT
TGACTTGCCTTGTACATCTTTCAGTTTTGGAATATCTGCGTCTAAGCACAATATCTTCAC
ACTGTGCTATATTGCTGCTGAACTAAATGCACTTTTCCCCACATGTGGGGCACTGGCTTC
AAACAATTCAGTTCAGTACCATTGATTTCAATCTCATCTTTCCTTTTTTGGTAGTTGTTA
ATACAGTTATGGAAAAGAGCACATTGCCTAGAAGCCATTGATAGTTCAGTGGAAGTTCTG
TAAGATGTGCATGTGCTACTTGATGTATTTTCTTTTGCTTTACTGCTTTTAAGGCTAGCA
GTATTGTAAATCTGTGCCCCTTATACAGTACTCTTACTTTTGATAGTGTCAGTCTAAGTC
AATTTAATTATTAAAGAGATTCACAGAGCAAGTACATTTTAGATATCATCCTAAAAAAAA
CACTTCCCATATAATGAATAACTATTATGTATAATTATGTATTGCTGCTTGGTTTTCTTT
CTTTTTTTTTTTTTCTTTTCCATTTAGATGATGGGCATTGTATTTTAAATAAAATCATTT
TTGAAGTAAGGCTGTAATATTAACATAGAAATTTGGAGTGTTGTTTTGCTTTTCCTGACA
CTCAAAATCAGGACTAAGTTTGAGGTTGAACCTATAATCATAATTGGCAATTTTTAAAGG
AGCAACTAAGAAATGGAAGGCAGGTAAAGATATAAAACCGTAGAATGCTTAAATGTGCTG
TAAAACTATTGTAGATGTCACTGGATTTTACCAAGTAATATCCTTTCTTCTTTTTTTTCC
ATCTACTGTGGCTTTTCAGTTAAAATTTTGTTTATAAAAGGAATTTGTTTATTACAGCTC
TACCTAGAGCTTGTGTGTATGTGTGGTTTTTAAAAATCTCATATCCAGGTGTGTTTATAT
CTTAAGATGATGGAACTTGAACTTTAAAGGCAGTAACCTAATGTCTTTTTTTAAAAATAT
GGTTATTGTTTCTTAAAAATGAAAATAGATATGGTTTTTAAAACATTTTGGTTCCTACCT
TCATTTACATTAGTTTGTAACAGAAATGCAAAGTGATCACAATCCTACATGTAGAAGTTA
TGTTATAGGCAAACCATCTGAGGAATTATAAATTTTTTTGAGACGCATAAAACGTCATGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               470-581, - strand, RNAz p=0.725277
               

               
               662-821, - strand, RNAz p=0.997386

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-581, - strand, RNAz p=0.725277
               

               
               662-821, - strand, RNAz p=0.997386

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               518-612, - strand, RNAmicro p=0.9967

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               518-612, - strand, RNAmicro p=0.9967

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1792, gnl|bosTau2|chr26 (20199846-20198033)
               

               
               1-1792, gnl|Hg17|chr10 (112761957-112763691)
               

               
               1-1792, gnl|Mm7|chr19 (53944530-53946268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1792, gnl|bosTau2|chr26 (20199846-20198033)
               

               
               1-1792, gnl|Hg17|chr10 (112761957-112763691)
               

               
               1-1792, gnl|Mm7|chr19 (53944530-53946268)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               amn (0.417711)
               

               
               cbl (0.344392)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cbl (0.344392)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               med (0.116252)

	470-581, - strand, RNAz p=0.725277
	662-821, - strand, RNAz p=0.997386

	1-1792, gnl\|bosTau2\|chr26 (20199846-20198033)
	1-1792, gnl\|Hg17\|chr10 (112761957-112763691)
	1-1792, gnl\|Mm7\|chr19 (53944530-53946268)

	amn (0.417711)
	cbl (0.344392)
	kid (0.259471)
	tra (0.246184)
	ece (0.229305)
	cty (0.20816)
	tes (0.207814)
	fcc (0.197785)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	rec (0.17307)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	pla (0.133672)
	ret (0.128733)
	med (0.116252)