Non-Coding RNA Search

Ss1.1-rcbl0_023167.5

Sequence:


               
               GGGATATGCAGGTGAATACCACAAAATTCATGCTGCTGTATGCCTGGTATTCTTGGCCCA
ATGTAATTTTGTGTTTCTTTGGTGGCTTTTTGATAGACCGAGTGTTTGGAATACGGTGGG
GCACCATTATTTTTAGTTGCTTTGTTTGCATTGGACAGGTTATTTTTGCTCTGGGTGGAA
TATTTAATGCTTTTTGGCTGATGGAACTTGGAAGGTTTGTGTTTGGGATTGGTGGAGAGT
CCTTAGCAGTTGCCCAGAATACATATGCTGTGAGTTGGTTTAAAGGCAAAGAATTAAACT
TGGTATTTGGACTCCAGCTTAGCATGGCTAGAATTGGAAGTACAGTAAACATGAACCTCA
TGGGATGGCTGTATTCTAAGGTTGAAGCTTCATTGGGTTCTGCTGGTCACACAACCCTTG
GGGTCACACTTCTGATCGGGGGTATAACATGTATTCTTTCACTGGTCTGTGCCTTGGCCC
TTGCTTACTTGGATCAGAGAGCAGAAAGAATCCTTCATAAAGAACAAGGAAAAACAGGTG
AAGTTATTAAGTTAACTGATGTGAAGGACTTCTCTTTACCCTTATGGCTCATATTTATCA
TCTGTGTCTGCTATTATGTGGCCGTGTTCCCTTTCATTGGACTTGGCAAAGTTTTCTTTA
CAGAAAAATTTGGATTTTCCTCCCAGGCAGCAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATATGCAGGTGAATACCACAAAATTCATGCTGCTGTATGCCTGGTATTCTTGGCCCA
ATGTAATTTTGTGTTTCTTTGGTGGCTTTTTGATAGACCGAGTGTTTGGAATACGGTGGG
GCACCATTATTTTTAGTTGCTTTGTTTGCATTGGACAGGTTATTTTTGCTCTGGGTGGAA
TATTTAATGCTTTTTGGCTGATGGAACTTGGAAGGTTTGTGTTTGGGATTGGTGGAGAGT
CCTTAGCAGTTGCCCAGAATACATATGCTGTGAGTTGGTTTAAAGGCAAAGAATTAAACT
TGGTATTTGGACTCCAGCTTAGCATGGCTAGAATTGGAAGTACAGTAAACATGAACCTCA
TGGGATGGCTGTATTCTAAGGTTGAAGCTTCATTGGGTTCTGCTGGTCACACAACCCTTG
GGGTCACACTTCTGATCGGGGGTATAACATGTATTCTTTCACTGGTCTGTGCCTTGGCCC
TTGCTTACTTGGATCAGAGAGCAGAAAGAATCCTTCATAAAGAACAAGGAAAAACAGGTG
AAGTTATTAAGTTAACTGATGTGAAGGACTTCTCTTTACCCTTATGGCTCATATTTATCA
TCTGTGTCTGCTATTATGTGGCCGTGTTCCCTTTCATTGGACTTGGCAAAGTTTTCTTTA
CAGAAAAATTTGGATTTTCCTCCCAGGCAGCAAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874766|ref|XP_585099.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874766|ref|XP_585099.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr4 (37705317-37704629)
               

               
               1-696, gnl|Hg17|chr17 (4151548-4152255)
               

               
               1-696, gnl|Mm7|chr3 (67685701-67697221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr4 (37705317-37704629)
               

               
               1-696, gnl|Hg17|chr17 (4151548-4152255)
               

               
               1-696, gnl|Mm7|chr3 (67685701-67697221)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.344392)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	1-696, gnl\|bosTau2\|chr4 (37705317-37704629)
	1-696, gnl\|Hg17\|chr17 (4151548-4152255)
	1-696, gnl\|Mm7\|chr3 (67685701-67697221)