Ss1.1-rcbl0_023174.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCAATCAAGTATCTGAAAATACTAAAGGTCAAAACCTTGTCAGATGTTAAGTTTGATT TGGAATTTTTTTTAAAAATAGAAATCAAGTTGTGGGGTTTTTTGGTGTTTTTTTTTTCTT TTTTTTTTTTTCTTTTTTTTTTTAAAGGAAAAGCGGGTCATTGCAAAGGGCTGGGTGTAA TTTTATGTTTCATTTCCTTCATTTTAAAGCAATACAAGGTTATTGAGCAGATGGTTTTGT GCCGAATCATGAATACCAGTCAAGTCTCACACTCTGAAAACTTGCAACTTTTTTGTTTTG GTTTTCAAATAAATATAAATATGATATATATAGGAACTAATATAGTAATGCACCATGTAA CAAAGCCTAGTTCAGTCCATGGCTTTTAATTCTCTTAACACTATAGATAAGGATTGTGTT ACAGTTGCTAGTAGTGGCAGGAAAACGTCAGTCTGGCGCTCCTCTGAACCCCCAAAGTGG GGGGGGCAACCCAAACCTTAAGGGGATGGCAGAACAGTCCATTCCCAGGATCAGAGAGAA ATGCAGAAACGGTGTCACCTGGATTTTTTCTGCCTGTGAATGTTGCCAGTCAGTACCTGT ACTCCTTGTTTATTTTTGGTTATGAACTGTTGGGGTAACCACCTGCATTTAGGGGAAAAT TGTGTTCTGTGCTTTCCTGGTATCTTGTTCCGAGGTACTCTAGTTCTGTCTTTCAACCAA GAAAATAGACTTGTGGTGTTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCAATCAAGTATCTGAAAATACTAAAGGTCAAAACCTTGTCAGATGTTAAGTTTGATT TGGAATTTTTTTTAAAAATAGAAATCAAGTTGTGGGGTTTTTTGGTGTTTTTTTTTTCTT TTTTTTTTTTTCTTTTTTTTTTTAAAGGAAAAGCGGGTCATTGCAAAGGGCTGGGTGTAA TTTTATGTTTCATTTCCTTCATTTTAAAGCAATACAAGGTTATTGAGCAGATGGTTTTGT GCCGAATCATGAATACCAGTCAAGTCTCACACTCTGAAAACTTGCAACTTTTTTGTTTTG GTTTTCAAATAAATATAAATATGATATATATAGGAACTAATATAGTAATGCACCATGTAA CAAAGCCTAGTTCAGTCCATGGCTTTTAATTCTCTTAACACTATAGATAAGGATTGTGTT ACAGTTGCTAGTAGTGGCAGGAAAACGTCAGTCTGGCGCTCCTCTGAACCCCCAAAGTGG GGGGGGCAACCCAAACCTTAAGGGGATGGCAGAACAGTCCATTCCCAGGATCAGAGAGAA ATGCAGAAACGGTGTCACCTGGATTTTTTCTGCCTGTGAATGTTGCCAGTCAGTACCTGT ACTCCTTGTTTATTTTTGGTTATGAACTGTTGGGGTAACCACCTGCATTTAGGGGAAAAT TGTGTTCTGTGCTTTCCTGGTATCTTGTTCCGAGGTACTCTAGTTCTGTCTTTCAACCAA GAAAATAGACTTGTGGTGTTTCTT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 414-611, - strand, RNAz p=0.999516 | |
| 423-580, - strand, RNAz p=0.998952 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 414-611, - strand, RNAz p=0.999516 | |
| 423-580, - strand, RNAz p=0.998952 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 506-611, DB315839 FCBBF3 Homo sapiens cDNA clone FCBBF3014375 3', mRNA (dbj|DB315839.1|), blast E-value=6e-26, identity=90.65% | |
| 499-474, BOTL0100008_F01 Normalized Bovine Total Leukocyte cDNA Library (gb|BM251391.1|), blast E-value=1e-17, identity=95.08% | |
| 499-466, BE030013B20E09 BE03 Normalized and Subtracted bovine embryonic and (gb|CN435511.1|), blast E-value=0.000000000000004, identity=96.23% | |
| 499-474, BovGen_20757 normal cattle brain Bos taurus cDNA clone (gb|CO892432.1|), blast E-value=1e-17, identity=95.08% | |
| 499-474, UMC-bmix_0B01-007-e09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb|CV982532.1|), blast E-value=1e-17, identity=95.08% | |
| 498-474, UMC-bemiv_0A02-017-h06 Nuclear-transfer derived blastocysts D8 (gb|CX951831.1|), blast E-value=0.000000000000004, identity=93.44% | |
| 423-474, AJ673591 KN224 Bos taurus cDNA clone KN224-013_B19, mRNA sequence (emb|AJ673591.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-474, BOTL0100008_F01 Normalized Bovine Total Leukocyte cDNA Library (gb|BM251391.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-580, BE030013B20E09 BE03 Normalized and Subtracted bovine embryonic and (gb|CN435511.1|), blast E-value=2e-25, identity=93.9% | |
| 499-474, BovGen_20757 normal cattle brain Bos taurus cDNA clone (gb|CO892432.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-474, UMC-bmix_0B01-007-e09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb|CV982532.1|), blast E-value=0.000000000003, identity=94.23% | |
| 498-580, UMC-bemiv_0A02-017-h06 Nuclear-transfer derived blastocysts D8 (gb|CX951831.1|), blast E-value=5e-26, identity=93.98% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 506-611, DB315839 FCBBF3 Homo sapiens cDNA clone FCBBF3014375 3', mRNA (dbj|DB315839.1|), blast E-value=6e-26, identity=90.65% | |
| 499-474, BOTL0100008_F01 Normalized Bovine Total Leukocyte cDNA Library (gb|BM251391.1|), blast E-value=1e-17, identity=95.08% | |
| 499-466, BE030013B20E09 BE03 Normalized and Subtracted bovine embryonic and (gb|CN435511.1|), blast E-value=0.000000000000004, identity=96.23% | |
| 499-474, BovGen_20757 normal cattle brain Bos taurus cDNA clone (gb|CO892432.1|), blast E-value=1e-17, identity=95.08% | |
| 499-474, UMC-bmix_0B01-007-e09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb|CV982532.1|), blast E-value=1e-17, identity=95.08% | |
| 498-474, UMC-bemiv_0A02-017-h06 Nuclear-transfer derived blastocysts D8 (gb|CX951831.1|), blast E-value=0.000000000000004, identity=93.44% | |
| 423-474, AJ673591 KN224 Bos taurus cDNA clone KN224-013_B19, mRNA sequence (emb|AJ673591.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-474, BOTL0100008_F01 Normalized Bovine Total Leukocyte cDNA Library (gb|BM251391.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-580, BE030013B20E09 BE03 Normalized and Subtracted bovine embryonic and (gb|CN435511.1|), blast E-value=2e-25, identity=93.9% | |
| 499-474, BovGen_20757 normal cattle brain Bos taurus cDNA clone (gb|CO892432.1|), blast E-value=0.000000000003, identity=94.23% | |
| 499-474, UMC-bmix_0B01-007-e09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb|CV982532.1|), blast E-value=0.000000000003, identity=94.23% | |
| 498-580, UMC-bemiv_0A02-017-h06 Nuclear-transfer derived blastocysts D8 (gb|CX951831.1|), blast E-value=5e-26, identity=93.98% |
| Aligned organism(s): 14 entry(ies) | More info |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
| 2-744, gnl|bosTau2|chr15 (15019608-15018883) | |
| 2-744, gnl|canFam2|chr5 (18220785-18219755) | |
| 2-744, gnl|dasNov1|scaffold_18463 (10166-11125) | |
| 2-744, gnl|echTel1|scaffold_98385 (1363-413) | |
| 2-744, gnl|galGal2|chr24 (4222723-4221881) | |
| 2-744, gnl|hg17|chr11 (117901083-117902044) | |
| 2-744, gnl|Hg17|chr11 (117901620-117902333) | |
| 2-744, gnl|mm7|chr9 (44739402-44738437) | |
| 2-744, gnl|Mm7|chr9 (44738888-44738156) | |
| 2-744, gnl|monDom2|scaffold_2 (120154933-120153960) | |
| 2-744, gnl|oryCun1|scaffold_207575 (66290-67257) | |
| 2-744, gnl|panTro1|chr9 (119910753-119911716) | |
| 2-744, gnl|rheMac2|chr14 (116914983-116915944) | |
| 2-744, gnl|rn3|chr8 (47769685-47768679) |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-744, gnl|bosTau2|chr15 (15019608-15018883) | |
| 2-744, gnl|canFam2|chr5 (18220785-18219755) | |
| 2-744, gnl|dasNov1|scaffold_18463 (10166-11125) | |
| 2-744, gnl|echTel1|scaffold_98385 (1363-413) | |
| 2-744, gnl|galGal2|chr24 (4222723-4221881) | |
| 2-744, gnl|hg17|chr11 (117901083-117902044) | |
| 2-744, gnl|Hg17|chr11 (117901620-117902333) | |
| 2-744, gnl|mm7|chr9 (44739402-44738437) | |
| 2-744, gnl|Mm7|chr9 (44738888-44738156) | |
| 2-744, gnl|monDom2|scaffold_2 (120154933-120153960) | |
| 2-744, gnl|oryCun1|scaffold_207575 (66290-67257) | |
| 2-744, gnl|panTro1|chr9 (119910753-119911716) | |
| 2-744, gnl|rheMac2|chr14 (116914983-116915944) | |
| 2-744, gnl|rn3|chr8 (47769685-47768679) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| che (0.136314) | |
| cbl (0.114797) |