Ss1.1-rcbl0_023262.5
|
GAAAATGGGTATATTGTAGGCAGTGATAATACAAGCTTTCTTTTCATTGCCTCTTACTTA
CCAGCAGACCACAGTTTTGGCCTGGCCAGACTAACTCTCAGAACAAAATTATTTATCATT
CCTTGTATTTACATTTGTATCTGGGATTTTAAACAACATGACTGGCCAGGTCAACAAAGC
ACCTTATTTAATTTCTTTTTTTTTTTAATAGAAAATCTTTTAAAATAGCTTGTTTTGTTT
GAGAACTGGTGCACTAGAAGTATAGCTATCCTTGGAACTTATGCTTCATTCAGACCGGAT
ATTAAACAAGACACTGTATTATATAATTTAGGCATTTCTGCCTTCCTGGTTGTATGCATC
ATGGTAAATATAAACTAACCACAAAATAGGTAGGTTTATTCATTCATTTTAATCTCCCTG
TATAATTCAGTACCTCCATAATTGTTCTAATCTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAAATGGGTATATTGTAGGCAGTGATAATACAAGCTTTCTTTTCATTGCCTCTTACTTA
CCAGCAGACCACAGTTTTGGCCTGGCCAGACTAACTCTCAGAACAAAATTATTTATCATT
CCTTGTATTTACATTTGTATCTGGGATTTTAAACAACATGACTGGCCAGGTCAACAAAGC
ACCTTATTTAATTTCTTTTTTTTTTTAATAGAAAATCTTTTAAAATAGCTTGTTTTGTTT
GAGAACTGGTGCACTAGAAGTATAGCTATCCTTGGAACTTATGCTTCATTCAGACCGGAT
ATTAAACAAGACACTGTATTATATAATTTAGGCATTTCTGCCTTCCTGGTTGTATGCATC
ATGGTAAATATAAACTAACCACAAAATAGGTAGGTTTATTCATTCATTTTAATCTCCCTG
TATAATTCAGTACCTCCATAATTGTTCTAATCTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
75-182, + strand, RNAmicro p=1 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
75-182, + strand, RNAmicro p=1 |
|
149-198, BP250018A20G9 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF043095.1|), blast E-value=0.0000000000001, identity=96% |
|
81-198, 393496 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI536482.1|),
blast E-value=2e-37, identity=92.37% |
|
81-198, fp108.z1 fp 73-75d fetal sheep skin library Ovis aries cDNA, mRNA
(gb|CF116966.1|), blast E-value=2e-37, identity=92.37% |
|
115-190, CH3#078_B02MF Canine heart normalized cDNA Library in pBluescript
(gb|CF412170.1|), blast E-value=0.000000000000008, identity=90.79% |
|
115-190, LIB3550-007-P1-K1-D3 LIB3550 Canis familiaris cDNA clone
(gb|DN341655.1|), blast E-value=0.000000000000008, identity=90.79% |
|
81-198, 001029BUTA006772HT BUTA Bos taurus cDNA, mRNA sequence (gb|DY038959.1|),
blast E-value=2e-37, identity=92.37% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
149-198, BP250018A20G9 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF043095.1|), blast E-value=0.0000000000001, identity=96% |
|
81-198, 393496 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI536482.1|),
blast E-value=2e-37, identity=92.37% |
|
81-198, fp108.z1 fp 73-75d fetal sheep skin library Ovis aries cDNA, mRNA
(gb|CF116966.1|), blast E-value=2e-37, identity=92.37% |
|
115-190, CH3#078_B02MF Canine heart normalized cDNA Library in pBluescript
(gb|CF412170.1|), blast E-value=0.000000000000008, identity=90.79% |
|
115-190, LIB3550-007-P1-K1-D3 LIB3550 Canis familiaris cDNA clone
(gb|DN341655.1|), blast E-value=0.000000000000008, identity=90.79% |
|
81-198, 001029BUTA006772HT BUTA Bos taurus cDNA, mRNA sequence (gb|DY038959.1|),
blast E-value=2e-37, identity=92.37% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
