Non-Coding RNA Search

Ss1.1-rcbl0_023367.5

Sequence:


               
               ATACTCTGGAAAGTAGCAATCAGCTGGCTTCTGAGATGGATGGAGCCCGGCACCCTGCCT
GGTCTGACACAGCAAACAACATGCTGAACTTTGAGGAGATCCGGCGGCTGATGTAGGAAG
ACGGCCCGTGCTGCCTTTTGCCCCAGCTGCCATATGGCTGAGGCCCTCTCCCTCATGAAG
GAATCCAAGCTCGTTTTTTATTATTGTCGTTTAGTCTTAGCACCTATTTAAGGATCCACT
TTTAGGGCTTGCCCACATTTGTTTCTAGATTTACCCCTGCGCTACAGTAAGCACTTTACC
TCCAGAACTGAGAGCAGATTTCTCCTCTTTTCTCCAAGTTAGTGGACAGACTGCCTGGAG
CATTTTGGGGCTTCCACCTAGGGCTACCTAGTACTATCCCTGGGTCCTGACTCACATATT
TTTTCGGCAGTGCTCCAGAGGCAGAGAGGAGCACAGTGAAGCAGACTCATTCTAATTGCC
AGGCTCTAACTTGCAGACTAACTTCCATCCTAATAAACAGGCCCAGAGGAGTTGTTTATG
AACTGTTTATCCTTTCAAGGAGCACAAGAATCCCTCCTACCCTCCCCCTTGGGCACCCTC
ATTCCGGGAGAACAGAGGCTTTTGATAAGACAAAGACTTCATTGACTAATCCTGACCTAG
TTGCATATTCACTGAGAGTGGGTAAAGTGACCAACCACAGCTGGGGGCTTACGCAGCAGG
CCCAGGCTAATAACTAAGGAGTGATCGCTTTACCTTTCCTGTGACTTGCACTTTGGGATG
GTGGAGGTTTCTTTGCCTGCAGTAGGAGAGGTTCAGTAGCTGTGCTGGTCCTCCAAGGCC
CTGAATGGAACTAAACTCATATTTGGTACCAGCAGCACCTATCCTGTGTCCCAGTACCCT
CTACTACAGCTTTTGCCTGGGCAGGGTTAGCATGCCAGCAGCTTCTGCAGGTTCCAGGTC
CATACCAGAAGCCAGCCCCCAGCCCTGCTGTTTGCATATATATTCCCTCAGTCCACTGTT
TCCTAGAACTGATAGTAGGCATCTCAGGTCTTTCTAATGTTGGTGAGAAAAACATCCTTT
TCCTATATATGCATTTCCTTTTTTGTCTTATACTATGCACTTTAGCCTATAAAACCAATT
AATAAAAATGATTGAGAAAATCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTCTGGAAAGTAGCAATCAGCTGGCTTCTGAGATGGATGGAGCCCGGCACCCTGCCT
GGTCTGACACAGCAAACAACATGCTGAACTTTGAGGAGATCCGGCGGCTGATGTAGGAAG
ACGGCCCGTGCTGCCTTTTGCCCCAGCTGCCATATGGCTGAGGCCCTCTCCCTCATGAAG
GAATCCAAGCTCGTTTTTTATTATTGTCGTTTAGTCTTAGCACCTATTTAAGGATCCACT
TTTAGGGCTTGCCCACATTTGTTTCTAGATTTACCCCTGCGCTACAGTAAGCACTTTACC
TCCAGAACTGAGAGCAGATTTCTCCTCTTTTCTCCAAGTTAGTGGACAGACTGCCTGGAG
CATTTTGGGGCTTCCACCTAGGGCTACCTAGTACTATCCCTGGGTCCTGACTCACATATT
TTTTCGGCAGTGCTCCAGAGGCAGAGAGGAGCACAGTGAAGCAGACTCATTCTAATTGCC
AGGCTCTAACTTGCAGACTAACTTCCATCCTAATAAACAGGCCCAGAGGAGTTGTTTATG
AACTGTTTATCCTTTCAAGGAGCACAAGAATCCCTCCTACCCTCCCCCTTGGGCACCCTC
ATTCCGGGAGAACAGAGGCTTTTGATAAGACAAAGACTTCATTGACTAATCCTGACCTAG
TTGCATATTCACTGAGAGTGGGTAAAGTGACCAACCACAGCTGGGGGCTTACGCAGCAGG
CCCAGGCTAATAACTAAGGAGTGATCGCTTTACCTTTCCTGTGACTTGCACTTTGGGATG
GTGGAGGTTTCTTTGCCTGCAGTAGGAGAGGTTCAGTAGCTGTGCTGGTCCTCCAAGGCC
CTGAATGGAACTAAACTCATATTTGGTACCAGCAGCACCTATCCTGTGTCCCAGTACCCT
CTACTACAGCTTTTGCCTGGGCAGGGTTAGCATGCCAGCAGCTTCTGCAGGTTCCAGGTC
CATACCAGAAGCCAGCCCCCAGCCCTGCTGTTTGCATATATATTCCCTCAGTCCACTGTT
TCCTAGAACTGATAGTAGGCATCTCAGGTCTTTCTAATGTTGGTGAGAAAAACATCCTTT
TCCTATATATGCATTTCCTTTTTTGTCTTATACTATGCACTTTAGCCTATAAAACCAATT
AATAAAAATGATTGAGAAAATCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               904-1061, - strand, RNAz p=0.895778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               904-1061, - strand, RNAz p=0.895778

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1163, gnl|bosTau2|chr13 (57725326-57724146)
               

               
               3-1163, gnl|Hg17|chr20 (47297324-47295841)
               

               
               3-1163, gnl|Mm7|chr2 (166777492-166776436)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1163, gnl|bosTau2|chr13 (57725326-57724146)
               

               
               3-1163, gnl|Hg17|chr20 (47297324-47295841)
               

               
               3-1163, gnl|Mm7|chr2 (166777492-166776436)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cje (0.330469)
               

               
               cbe (0.239234)
               

               
               ton (0.1755)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               cbe (0.239234)
               

               
               ton (0.1755)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	3-1163, gnl\|bosTau2\|chr13 (57725326-57724146)
	3-1163, gnl\|Hg17\|chr20 (47297324-47295841)
	3-1163, gnl\|Mm7\|chr2 (166777492-166776436)

	cje (0.330469)
	cbe (0.239234)
	ton (0.1755)
	lin (0.145603)
	lnt (0.142308)
	cst (0.140036)
	ste (0.135208)
	thg (0.126791)
	tra (0.123092)
	cly (0.120642)
	ecc (0.115035)
	cbl (0.114797)