Non-Coding RNA Search

Ss1.1-rcbl0_023804.5

Sequence:


               
               TTTTGGGTAATCTTTGAGGACTTTCCAACTGGAGACATTTAAAAACTGCATTATTATCGT
GTTAAGATCATTGTAACTGCATGACCATGTTAATATATCAAGAGAAATTAAGTTTTGTCA
AAGAAATCCTTGAGTTTCTCTCCTTTGAGTTCAATTACTGTAAAACCTTTAACTTCTTGA
AATTTGGTAAGACTCCAAATAACTTAAAACTGTTTTTAATAGCCATCAGATCACTTTATT
TGGGTAAATGGTAAATTCCTTTTACATCTTCAGCATTTCTTAAAGGAAAAGCTCTTTCTG
CTTGTATGTGTGTGCATATGTGTATATGTATTTATATAAGTGTATGTATATATGTATAGA
TAGATGAAATATGGTCCTTACACCACTTTCTTTTATTCTTCCCTGTAGTATATTGTACTC
AACTCAGGTGCCAAAAGAGCTCTCTTCTTAAGACATGTAAATATACATTTAAATTTTTTA
AGAAGTAGTTTATTGGTTCAATAAACTAGTCATTACAGAAGCTAAATTGGGCTCTTCTAT
ATCTAAAACTGATGAGTTTTTTTCTAAATTATTAATTGCCCATTTATTTGCCTTCAGTAT
TAAACTAATCCAGGTAAAGCTTAGTAAGTCAGTCATTGGAGAAAGAGGAAATTATAACCT
TTACCAAAAAACCATACTATAATTTTTAATCTCTAGAGGAATTCTCTCATACTAAAAACA
AAAAAGCAAGAGATGTTTCAATTTTGAATTATAAACTATTTTTTTAAAAAATAATACCGG
TTTTTCTTTTACTCTGAGGAATTTTAAATAGTTTGTCTTCCCCTTAATAGAATACACAGG
GTTGTTAATTTCCATACATTTTTCCTATCATTTTTATTGTAAAAAAGCAACTAGTGATTG
CACAAACAGTATAAGAATTCAGCTTTTTCATAAAGGTGAATTCAAATATTGTCTCTGATT
AAAATATGAAAATAAACGAATTTTTTTGGAGAGAACTTACTAATAGATAACTCAATTCTT
ATTTTTTTTTCCTCCCAAGATCGAAAACAAATGTCTATCAAAAGCAGATGAAATATGTCA
TTAAAGTGGGAATATAGAGAGCCCCCTCTAAGGTGAACAGATGTCAGTAACACATCTGAA
TATTAATGTTAAATTGTGATAGGTTTTAAAACAGTTTAATTTGCTTTTTTGATAGGATGC
CTGGATAGATGAGATTAAAAATAGATGAGGTGTAGATGACATGTGTCATTTTAATTTTTT
CCCCTGCAGTAAATAAAGTTAGCCTAACTCTGAGCAATAACATTGTAACGGCATTTTAAA
GAAGAAAGCAGTACCTGTTCTCCAGTCTGTAATGAGATAAGGCACCTGTGCTAGAATATA
AAGCAATACATTGCTTCCTTTATCAAGAAAGTCTTGTTATAAAAAAAAAAAATGTCAGCC
CGTTAGTGACATAATTAATTTTCATTCTGGCACAAGTTCTTTCATTTTGGATGAGTCACA
AATTATTCATAGACTATTTTGAACAGCCTTGCTCTAAGCAACATTTTTAACTGTTGATAT
TTTATAACTGTTTACATTTCCTCTGGGTTTTTTTTAAATTTTCTGTTTGATATCTGACTT
GGAAACTCGTCCTTATTCATTGTTGTGCAAACAATTGTACTTTAATTTCAAATTGTATTA
AAATTAAGTTATCTGACTTCTAATTTGGGGAATTATTATCTGTTTATAATTTCATAAGGT
TTAAAGAAATTTAAATTTGTTTATAAATGTCACACAGGTCACAACCGCCATCCATCTTAG
CTATGAATTCAGGAATCATGTTGTTCGAGGTGTATTGAGCTACACTGTTATGGCTACACC
AACTGAAAAAGCTTCTTACATCAAGTTATTGATCCTTTTGGATAAAAATTAAAAAGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGGTAATCTTTGAGGACTTTCCAACTGGAGACATTTAAAAACTGCATTATTATCGT
GTTAAGATCATTGTAACTGCATGACCATGTTAATATATCAAGAGAAATTAAGTTTTGTCA
AAGAAATCCTTGAGTTTCTCTCCTTTGAGTTCAATTACTGTAAAACCTTTAACTTCTTGA
AATTTGGTAAGACTCCAAATAACTTAAAACTGTTTTTAATAGCCATCAGATCACTTTATT
TGGGTAAATGGTAAATTCCTTTTACATCTTCAGCATTTCTTAAAGGAAAAGCTCTTTCTG
CTTGTATGTGTGTGCATATGTGTATATGTATTTATATAAGTGTATGTATATATGTATAGA
TAGATGAAATATGGTCCTTACACCACTTTCTTTTATTCTTCCCTGTAGTATATTGTACTC
AACTCAGGTGCCAAAAGAGCTCTCTTCTTAAGACATGTAAATATACATTTAAATTTTTTA
AGAAGTAGTTTATTGGTTCAATAAACTAGTCATTACAGAAGCTAAATTGGGCTCTTCTAT
ATCTAAAACTGATGAGTTTTTTTCTAAATTATTAATTGCCCATTTATTTGCCTTCAGTAT
TAAACTAATCCAGGTAAAGCTTAGTAAGTCAGTCATTGGAGAAAGAGGAAATTATAACCT
TTACCAAAAAACCATACTATAATTTTTAATCTCTAGAGGAATTCTCTCATACTAAAAACA
AAAAAGCAAGAGATGTTTCAATTTTGAATTATAAACTATTTTTTTAAAAAATAATACCGG
TTTTTCTTTTACTCTGAGGAATTTTAAATAGTTTGTCTTCCCCTTAATAGAATACACAGG
GTTGTTAATTTCCATACATTTTTCCTATCATTTTTATTGTAAAAAAGCAACTAGTGATTG
CACAAACAGTATAAGAATTCAGCTTTTTCATAAAGGTGAATTCAAATATTGTCTCTGATT
AAAATATGAAAATAAACGAATTTTTTTGGAGAGAACTTACTAATAGATAACTCAATTCTT
ATTTTTTTTTCCTCCCAAGATCGAAAACAAATGTCTATCAAAAGCAGATGAAATATGTCA
TTAAAGTGGGAATATAGAGAGCCCCCTCTAAGGTGAACAGATGTCAGTAACACATCTGAA
TATTAATGTTAAATTGTGATAGGTTTTAAAACAGTTTAATTTGCTTTTTTGATAGGATGC
CTGGATAGATGAGATTAAAAATAGATGAGGTGTAGATGACATGTGTCATTTTAATTTTTT
CCCCTGCAGTAAATAAAGTTAGCCTAACTCTGAGCAATAACATTGTAACGGCATTTTAAA
GAAGAAAGCAGTACCTGTTCTCCAGTCTGTAATGAGATAAGGCACCTGTGCTAGAATATA
AAGCAATACATTGCTTCCTTTATCAAGAAAGTCTTGTTATAAAAAAAAAAAATGTCAGCC
CGTTAGTGACATAATTAATTTTCATTCTGGCACAAGTTCTTTCATTTTGGATGAGTCACA
AATTATTCATAGACTATTTTGAACAGCCTTGCTCTAAGCAACATTTTTAACTGTTGATAT
TTTATAACTGTTTACATTTCCTCTGGGTTTTTTTTAAATTTTCTGTTTGATATCTGACTT
GGAAACTCGTCCTTATTCATTGTTGTGCAAACAATTGTACTTTAATTTCAAATTGTATTA
AAATTAAGTTATCTGACTTCTAATTTGGGGAATTATTATCTGTTTATAATTTCATAAGGT
TTAAAGAAATTTAAATTTGTTTATAAATGTCACACAGGTCACAACCGCCATCCATCTTAG
CTATGAATTCAGGAATCATGTTGTTCGAGGTGTATTGAGCTACACTGTTATGGCTACACC
AACTGAAAAAGCTTCTTACATCAAGTTATTGATCCTTTTGGATAAAAATTAAAAAGCACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-1030, gnl|bosTau2|chr2 (42702040-42701029)
               

               
               4-1030, gnl|Hg17|chr2 (196826459-196825122)
               

               
               4-1030, gnl|Mm7|chr1 (53990008-53989012)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1030, gnl|bosTau2|chr2 (42702040-42701029)
               

               
               4-1030, gnl|Hg17|chr2 (196826459-196825122)
               

               
               4-1030, gnl|Mm7|chr1 (53990008-53989012)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               cbl (1.49237)
               

               
               liv (0.731422)
               

               
               spl (0.429553)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               nbm (0.297974)
               

               
               lin (0.291206)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.49237)
               

               
               liv (0.731422)
               

               
               spl (0.429553)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               nbm (0.297974)
               

               
               lin (0.291206)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	4-1030, gnl\|bosTau2\|chr2 (42702040-42701029)
	4-1030, gnl\|Hg17\|chr2 (196826459-196825122)
	4-1030, gnl\|Mm7\|chr1 (53990008-53989012)

	cbl (1.49237)
	liv (0.731422)
	spl (0.429553)
	sin (0.349895)
	rec (0.346141)
	nbm (0.297974)
	lin (0.291206)
	cty (0.20816)
	fli (0.202881)
	ill (0.175593)
	mga (0.160205)
	hyp (0.142837)
	lnt (0.142308)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	clu (0.119646)
	med (0.116252)