Non-Coding RNA Search

Ss1.1-rcbl0_023810.5

Sequence:


               
               CTGAGCTGGAAATGCAAGTGTTTGGAGCTTCGGAGGCTGCGGAGCTGGAGGCGGAGGCGG
CCGGGGCGGTCCGAGCGATGTGACCAGGCCGCCGTCGCTCGTCTCTTCCTTTCTCCTGCC
GCCTCCTGTCTCGAAAATAACTTTTTACTATAAAGAAGGGAGGAGAAAAAAGTAGCCGTC
CACCGCTCACGCTCTCTCCCCCTCTCAGCCCACTGACCTGTGAGGGAGCCCGGGGTGGCC
GCTCCGCCGTCGGGGCCGCACCGCCGAGCCCCGGCCGCCCCGGGCCGCCCCCGCCTGCCG
CCCCCATGCATCCCTTCTACACCCGGGCCGCCACCATGATAGGCGAGATCGCCGCCGCCG
TGTCCTTCATCTCCAAGTTTCTCCGCACCAAGGGGCTCACGAGCGAGCGACAGCTGCAGA
CCTTCAGCCAGAGCCTGCAGGAGCTGCTGGCAGAACATTATAAACACCACTGGTTCCCAG
AAAAGCCGTGCAAAGGATCAGGTTACCGTTGTATTCGCATCAACCATAAAATGGATCCTC
TGATTGGACAGGCAGCACAGCGGATTGGACTGAGCAGTCAGGAGCTGTTCAGGCTTCTCC
CAAGTGAACTCACTCTCTGGGTTGACCCTTACGAAGTGTCCTACAGAATTGGAGAGGATG
GTTCCATCTGTGTGCTGTACGAAGCCTCACCAGCAGGAGGTAGCACCCAAAACAGCACCA
ACGTGCAAATGGTAGACAGCAGAATCAGCTGTAAGGAGGAACTTCTCTTGGGCAGAACAA
GCCCTTCCAAAAGCTACAATATGATGACTGTATCAGGTTAAGATATAGTCTATGGATGGA
TCCTCTTATAATGGATGGATAAATTTGATTTTTGCTTTGGGTGGGCTCCTCTTGGGGATG
GATTATGGAATTTAAACCATGTCACAGCTGTGAAGATCTGGCACAAGATAGAGTGGTAAA
AAAATTTTTTTAAGTGACAGTGCCATAGTTTGGACAGTACCTTTCAATGACTTAATAGCC
TGTGAGTCCAAGTAAATTGATCACCTTATTTGCTAGGGAGTGAAGTCCTGGGGTGGTTTC
AGTTTCTCCCGGACATGATACCTAAATTTTTACATCAGTCCCTTTAACACAAATCCATAT
TTCAAAGAACCTTTCTCTGCGGTAGAACTTGGCAGAGGAAATTTGCACTATTACACTTAA
ATTGTTATCCTTTTTGGCAGCTCGATAGGAAAGCTCAACATTTTAAACGCGGTAGTACTG
GAAATTTTATAACAAGACTTTTACCTAGCACTTAAATATGTATAAATGTACATAAGACAA
AACTAGTAAGCATGACCTGGGGAAATGGTCAGACCTTGTATTGTGTTTTTGGCCTTGAAA
GTAGCAAGTGACCAGAATCTGCCATGGCAACAGGCTTTAAAAAAAGACCTTAAAAAGACA
CTGTCTCAACTGTGGTGTTAGCACCAGCCAGCTCTCTGTACATTTGCTAGCTTGTAGTTT
TCTAAGACTGAGTAAACTTCTTATTTTTAGAAAGTGGAGGTCTGGTTTGTAACTTTCCTT
GTACTTAATTGGGTAAAAGTCTTTTCCACAAACCACCATCTATTTTGTGAACTTTGTTAG
TCATCTTTTATTTGGTAAATTATGAACTGGTGTAAATTTGTACAGTTCATGTATATTGAT
TGTGGCAAAGTTGTACAGATTTCTATATTTTGGATGAGAAATTTTTCTTCTCTCTATAAT
AAATTGTTTCTTATCTTGGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGCTGGAAATGCAAGTGTTTGGAGCTTCGGAGGCTGCGGAGCTGGAGGCGGAGGCGG
CCGGGGCGGTCCGAGCGATGTGACCAGGCCGCCGTCGCTCGTCTCTTCCTTTCTCCTGCC
GCCTCCTGTCTCGAAAATAACTTTTTACTATAAAGAAGGGAGGAGAAAAAAGTAGCCGTC
CACCGCTCACGCTCTCTCCCCCTCTCAGCCCACTGACCTGTGAGGGAGCCCGGGGTGGCC
GCTCCGCCGTCGGGGCCGCACCGCCGAGCCCCGGCCGCCCCGGGCCGCCCCCGCCTGCCG
CCCCCATGCATCCCTTCTACACCCGGGCCGCCACCATGATAGGCGAGATCGCCGCCGCCG
TGTCCTTCATCTCCAAGTTTCTCCGCACCAAGGGGCTCACGAGCGAGCGACAGCTGCAGA
CCTTCAGCCAGAGCCTGCAGGAGCTGCTGGCAGAACATTATAAACACCACTGGTTCCCAG
AAAAGCCGTGCAAAGGATCAGGTTACCGTTGTATTCGCATCAACCATAAAATGGATCCTC
TGATTGGACAGGCAGCACAGCGGATTGGACTGAGCAGTCAGGAGCTGTTCAGGCTTCTCC
CAAGTGAACTCACTCTCTGGGTTGACCCTTACGAAGTGTCCTACAGAATTGGAGAGGATG
GTTCCATCTGTGTGCTGTACGAAGCCTCACCAGCAGGAGGTAGCACCCAAAACAGCACCA
ACGTGCAAATGGTAGACAGCAGAATCAGCTGTAAGGAGGAACTTCTCTTGGGCAGAACAA
GCCCTTCCAAAAGCTACAATATGATGACTGTATCAGGTTAAGATATAGTCTATGGATGGA
TCCTCTTATAATGGATGGATAAATTTGATTTTTGCTTTGGGTGGGCTCCTCTTGGGGATG
GATTATGGAATTTAAACCATGTCACAGCTGTGAAGATCTGGCACAAGATAGAGTGGTAAA
AAAATTTTTTTAAGTGACAGTGCCATAGTTTGGACAGTACCTTTCAATGACTTAATAGCC
TGTGAGTCCAAGTAAATTGATCACCTTATTTGCTAGGGAGTGAAGTCCTGGGGTGGTTTC
AGTTTCTCCCGGACATGATACCTAAATTTTTACATCAGTCCCTTTAACACAAATCCATAT
TTCAAAGAACCTTTCTCTGCGGTAGAACTTGGCAGAGGAAATTTGCACTATTACACTTAA
ATTGTTATCCTTTTTGGCAGCTCGATAGGAAAGCTCAACATTTTAAACGCGGTAGTACTG
GAAATTTTATAACAAGACTTTTACCTAGCACTTAAATATGTATAAATGTACATAAGACAA
AACTAGTAAGCATGACCTGGGGAAATGGTCAGACCTTGTATTGTGTTTTTGGCCTTGAAA
GTAGCAAGTGACCAGAATCTGCCATGGCAACAGGCTTTAAAAAAAGACCTTAAAAAGACA
CTGTCTCAACTGTGGTGTTAGCACCAGCCAGCTCTCTGTACATTTGCTAGCTTGTAGTTT
TCTAAGACTGAGTAAACTTCTTATTTTTAGAAAGTGGAGGTCTGGTTTGTAACTTTCCTT
GTACTTAATTGGGTAAAAGTCTTTTCCACAAACCACCATCTATTTTGTGAACTTTGTTAG
TCATCTTTTATTTGGTAAATTATGAACTGGTGTAAATTTGTACAGTTCATGTATATTGAT
TGTGGCAAAGTTGTACAGATTTCTATATTTTGGATGAGAAATTTTTCTTCTCTCTATAAT
AAATTGTTTCTTATCTTGGCATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|29509|emb|CAA43435.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29509|emb|CAA43435.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-569, - strand, RNAz p=0.530362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-569, - strand, RNAz p=0.530362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               451-693, gnl|bosTau2|chr16 (2463945-2464187)
               

               
               451-693, gnl|Hg17|chr1 (200007886-200008128)
               

               
               451-693, gnl|Mm7|chr1 (133967491-133967249)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               451-693, gnl|bosTau2|chr16 (2463945-2464187)
               

               
               451-693, gnl|Hg17|chr1 (200007886-200008128)
               

               
               451-693, gnl|Mm7|chr1 (133967491-133967249)

Expressed library(ies): 63 entry(ies)

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Expressed library(ies): 63 entry(ies)

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               cbl (5.51027)
               

               
               fty (1.40672)
               

               
               elu (1.15607)
               

               
               fat (1.03199)
               

               
               sug (1.01833)
               

               
               lnt (0.996158)
               

               
               clu (0.837521)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               thg (0.633955)
               

               
               cty (0.62448)
               

               
               bla (0.621736)
               

               
               med (0.58126)
               

               
               fce (0.543183)
               

               
               pla (0.534688)
               

               
               nmm (0.531209)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 63 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (5.51027)
               

               
               fty (1.40672)
               

               
               elu (1.15607)
               

               
               fat (1.03199)
               

               
               sug (1.01833)
               

               
               lnt (0.996158)
               

               
               clu (0.837521)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               thg (0.633955)
               

               
               cty (0.62448)
               

               
               bla (0.621736)
               

               
               med (0.58126)
               

               
               fce (0.543183)
               

               
               pla (0.534688)
               

               
               nmm (0.531209)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	451-693, gnl\|bosTau2\|chr16 (2463945-2464187)
	451-693, gnl\|Hg17\|chr1 (200007886-200008128)
	451-693, gnl\|Mm7\|chr1 (133967491-133967249)

	cbl (5.51027)
	fty (1.40672)
	elu (1.15607)
	fat (1.03199)
	sug (1.01833)
	lnt (0.996158)
	clu (0.837521)
	tra (0.738552)
	spl (0.715922)
	thg (0.633955)
	cty (0.62448)
	bla (0.621736)
	med (0.58126)
	fce (0.543183)
	pla (0.534688)
	nmm (0.531209)
	liv (0.438853)
	amn (0.417711)
	hea (0.408998)
	gul (0.355177)
	fbs (0.350693)
	duo (0.345602)
	ecc (0.345105)
	mcp (0.341297)
	spc (0.340097)
	tbr (0.308356)
	cag (0.302389)
	ski (0.29347)
	lin (0.291206)
	cst (0.280073)
	ste (0.270416)
	ute (0.265569)
	eep (0.245128)
	cly (0.241284)
	eru (0.240096)
	cbe (0.239234)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	mgm (0.180343)
	ill (0.175593)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	eli (0.151814)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)
	ldo (0.0970026)